Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19576 | 3' | -55 | NC_004686.1 | + | 2386 | 0.68 | 0.632525 |
Target: 5'- uGGACGGGUaAGGCuguugaugcuuugGCCC-GCCG-CUGCa -3' miRNA: 3'- -CCUGUCUA-UCUG-------------UGGGaCGGCuGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 4179 | 0.7 | 0.497838 |
Target: 5'- gGGACAGccucgcaGUAGcaaugcccaugacacGCgaACCUUGCCGACCGUu -3' miRNA: 3'- -CCUGUC-------UAUC---------------UG--UGGGACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 4713 | 0.66 | 0.775595 |
Target: 5'- aGGaACAGAUcagcgucuuccagugAGAUuCCgUGCgUGACCGCa -3' miRNA: 3'- -CC-UGUCUA---------------UCUGuGGgACG-GCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 5265 | 0.66 | 0.775595 |
Target: 5'- cGGACAGGUccgccauggucugcaGGACGCCgaGuuGACg-- -3' miRNA: 3'- -CCUGUCUA---------------UCUGUGGgaCggCUGgcg -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 7182 | 0.66 | 0.760512 |
Target: 5'- uGGCcgccguGCACCCUGCCGgcucgacACCGCa -3' miRNA: 3'- cCUGucuaucUGUGGGACGGC-------UGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 9892 | 0.69 | 0.596559 |
Target: 5'- cGGugAGAgacuguccaguggGGACGCCg-GCggCGACCGCa -3' miRNA: 3'- -CCugUCUa------------UCUGUGGgaCG--GCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 11290 | 0.67 | 0.698723 |
Target: 5'- -cACGGAacGcCGCCCUGCUuGAUCGCa -3' miRNA: 3'- ccUGUCUauCuGUGGGACGG-CUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 11435 | 0.68 | 0.655431 |
Target: 5'- gGGACAuuUGGaaGCACCCauaUGACCGCa -3' miRNA: 3'- -CCUGUcuAUC--UGUGGGacgGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 11730 | 0.67 | 0.698723 |
Target: 5'- cGGucACAuGGcGGGCACCCUGCCcaACgGCa -3' miRNA: 3'- -CC--UGU-CUaUCUGUGGGACGGc-UGgCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 12139 | 0.67 | 0.698723 |
Target: 5'- cGGGCAGuuucGGCGCCggcgGUCaGGCCGCg -3' miRNA: 3'- -CCUGUCuau-CUGUGGga--CGG-CUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 12844 | 0.66 | 0.769599 |
Target: 5'- cGGGCAGAacgaUGaACACCuCUGCgugcacggcgagGACCGCg -3' miRNA: 3'- -CCUGUCU----AUcUGUGG-GACGg-----------CUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 12966 | 1.15 | 0.000475 |
Target: 5'- cGGACAGAUAGACACCCUGCCGACCGCg -3' miRNA: 3'- -CCUGUCUAUCUGUGGGACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 13061 | 0.67 | 0.72003 |
Target: 5'- cGGAgCAGAacGAguCCCUGCUGAUCcagGCg -3' miRNA: 3'- -CCU-GUCUauCUguGGGACGGCUGG---CG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 13277 | 0.67 | 0.72003 |
Target: 5'- cGGACuGGUaugAGAagcCGCaCgUGUCGACCGCc -3' miRNA: 3'- -CCUGuCUA---UCU---GUG-GgACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 16969 | 0.68 | 0.629251 |
Target: 5'- uGGGCGGucauaccaGCCCucaauaguguUGCCGGCCGCc -3' miRNA: 3'- -CCUGUCuaucug--UGGG----------ACGGCUGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 17443 | 0.67 | 0.72003 |
Target: 5'- aGGAUGGGaaugucuGACGCCCaGuuGGCCaGCg -3' miRNA: 3'- -CCUGUCUau-----CUGUGGGaCggCUGG-CG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 18764 | 0.71 | 0.478515 |
Target: 5'- gGGGCAGcgccucgucaagcugGUAGuACACCCaGCCGGuuGUg -3' miRNA: 3'- -CCUGUC---------------UAUC-UGUGGGaCGGCUggCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 21299 | 0.68 | 0.666312 |
Target: 5'- uGGCcc--AGGCACCgCUGCUGACCGa -3' miRNA: 3'- cCUGucuaUCUGUGG-GACGGCUGGCg -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 22356 | 0.67 | 0.72003 |
Target: 5'- uGAUGGuguuguguUGGACAgCUUGCCGccGCCGCc -3' miRNA: 3'- cCUGUCu-------AUCUGUgGGACGGC--UGGCG- -5' |
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19576 | 3' | -55 | NC_004686.1 | + | 23854 | 0.68 | 0.64453 |
Target: 5'- cGGACG---GGACACCUUcGCCGAUCu- -3' miRNA: 3'- -CCUGUcuaUCUGUGGGA-CGGCUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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