miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19651 3' -59.3 NC_004686.1 + 3747 0.66 0.531748
Target:  5'- gGCGGCGGCGGacuGGuacgacgagcuGCGugaaAGCGCUg -3'
miRNA:   3'- gCGCCGCCGCCauuCC-----------CGU----UUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 31950 0.66 0.542063
Target:  5'- cCGCGaCGGCGGguaucccGAGGGCGAuuguUGCg- -3'
miRNA:   3'- -GCGCcGCCGCCa------UUCCCGUUu---GCGgg -5'
19651 3' -59.3 NC_004686.1 + 21145 0.66 0.531748
Target:  5'- aCGCGGCuaagGGUGGUcAGGcGUuguuccGCGCCg -3'
miRNA:   3'- -GCGCCG----CCGCCAuUCC-CGuu----UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 14750 0.66 0.531748
Target:  5'- aCGCGGUguaccGGCaGGUGGagaccGGGCAGcACGUCa -3'
miRNA:   3'- -GCGCCG-----CCG-CCAUU-----CCCGUU-UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 15676 0.66 0.521505
Target:  5'- cCGCGauGCGGUGGccc-GGCuGACGCCg -3'
miRNA:   3'- -GCGC--CGCCGCCauucCCGuUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 47805 0.66 0.511339
Target:  5'- gGCGGCuacgggcgcuuuGGCGc-GGGGGCGGAUGUCa -3'
miRNA:   3'- gCGCCG------------CCGCcaUUCCCGUUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 3842 0.66 0.511339
Target:  5'- aCGCGcUGGCcgGGUGGGuGGCGGAaccguugaaacUGCCCg -3'
miRNA:   3'- -GCGCcGCCG--CCAUUC-CCGUUU-----------GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 38700 0.66 0.501257
Target:  5'- gGgGGUGGU-GUAGGuGGCGAACuCCCc -3'
miRNA:   3'- gCgCCGCCGcCAUUC-CCGUUUGcGGG- -5'
19651 3' -59.3 NC_004686.1 + 32540 0.66 0.501257
Target:  5'- uCGUGGUGcccGUcagGGUGAGGGUgacagAGACGCCa -3'
miRNA:   3'- -GCGCCGC---CG---CCAUUCCCG-----UUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 33463 0.66 0.541029
Target:  5'- cCGCGGCgccggggguuaGGCgGGUGAGcugagugaccaccGGCugucCGCCCg -3'
miRNA:   3'- -GCGCCG-----------CCG-CCAUUC-------------CCGuuu-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 33636 0.66 0.511339
Target:  5'- cCGcCGGUGaUGGUGAGGGCGGcuGCGgCg -3'
miRNA:   3'- -GC-GCCGCcGCCAUUCCCGUU--UGCgGg -5'
19651 3' -59.3 NC_004686.1 + 36654 0.67 0.471559
Target:  5'- aGCGGUGGa-GUuGGaGGCGuugcgugaagagAACGCCCg -3'
miRNA:   3'- gCGCCGCCgcCAuUC-CCGU------------UUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 22361 0.67 0.433407
Target:  5'- gGCGGCaGCGGUGAcGGCuccaauGGCgGCaCCg -3'
miRNA:   3'- gCGCCGcCGCCAUUcCCGu-----UUG-CG-GG- -5'
19651 3' -59.3 NC_004686.1 + 6370 0.67 0.433407
Target:  5'- uGCGGCGuGCGGUGucuGCGu-CGCUCa -3'
miRNA:   3'- gCGCCGC-CGCCAUuccCGUuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 22681 0.67 0.442779
Target:  5'- -cCGGCGGCagcguucaucGGUGuaucGGGCGGACaGCCg -3'
miRNA:   3'- gcGCCGCCG----------CCAUu---CCCGUUUG-CGGg -5'
19651 3' -59.3 NC_004686.1 + 32396 0.67 0.433407
Target:  5'- cCGCGGCcgaucGCGGUGugcauacGGCGAAUGUCUg -3'
miRNA:   3'- -GCGCCGc----CGCCAUuc-----CCGUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 44806 0.67 0.452264
Target:  5'- uGCGGCGGUgauguacacGGUuucuGGGacGugGCCCc -3'
miRNA:   3'- gCGCCGCCG---------CCAuu--CCCguUugCGGG- -5'
19651 3' -59.3 NC_004686.1 + 41193 0.67 0.456088
Target:  5'- uCGCGcUGGUGGaacucccggagaaguUGGGGGaGGACGCCCc -3'
miRNA:   3'- -GCGCcGCCGCC---------------AUUCCCgUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 37697 0.67 0.468638
Target:  5'- cCGUGGUGGCauccguaauuccgaGGUGuaccggaccGGGGCGucguggAGCGCCa -3'
miRNA:   3'- -GCGCCGCCG--------------CCAU---------UCCCGU------UUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 22085 0.67 0.485311
Target:  5'- gGCGGCcagGGCGGcaaaAAGGGCAccaacucgucgagcaGugGCgCg -3'
miRNA:   3'- gCGCCG---CCGCCa---UUCCCGU---------------UugCGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.