miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19651 3' -59.3 NC_004686.1 + 9109 0.96 0.004389
Target:  5'- aCGCGGCGGCGGUAAGGGaacACGCCCc -3'
miRNA:   3'- -GCGCCGCCGCCAUUCCCguuUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 39779 0.77 0.106304
Target:  5'- cCGCGGCGaCGGUGGGGuGCAGucgaaccgcguuGCGCCg -3'
miRNA:   3'- -GCGCCGCcGCCAUUCC-CGUU------------UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 21894 0.77 0.109248
Target:  5'- gGCGGCGGCGGUGgcGGuGGCgg-UGCCUa -3'
miRNA:   3'- gCGCCGCCGCCAU--UC-CCGuuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 22245 0.77 0.109248
Target:  5'- gCGCGGgcgcUGGCGGUAAGGGCGgcGGCGgCa -3'
miRNA:   3'- -GCGCC----GCCGCCAUUCCCGU--UUGCgGg -5'
19651 3' -59.3 NC_004686.1 + 25878 0.76 0.121803
Target:  5'- uGUGGUGGCuGUGAGGGUGAuuACgGCCCu -3'
miRNA:   3'- gCGCCGCCGcCAUUCCCGUU--UG-CGGG- -5'
19651 3' -59.3 NC_004686.1 + 4843 0.75 0.135324
Target:  5'- aGCGGCGGCGGUuccuaaccucugaAAGG--AAACGCCUc -3'
miRNA:   3'- gCGCCGCCGCCA-------------UUCCcgUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 43702 0.75 0.13938
Target:  5'- gGUGGCccuGCGGgaagugcGGGGGUAGGCGCCCc -3'
miRNA:   3'- gCGCCGc--CGCCa------UUCCCGUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 45989 0.74 0.181655
Target:  5'- --gGGCGGUGGUGAGGGUAccgauaccaccaGACGCg- -3'
miRNA:   3'- gcgCCGCCGCCAUUCCCGU------------UUGCGgg -5'
19651 3' -59.3 NC_004686.1 + 2756 0.73 0.186457
Target:  5'- gGUGGUGuggucacaGCGGUGAGGGU---CGCCCa -3'
miRNA:   3'- gCGCCGC--------CGCCAUUCCCGuuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 51105 0.73 0.196397
Target:  5'- uGCGGgggaUGGCGGUGacGGGaGCGAACGUCg -3'
miRNA:   3'- gCGCC----GCCGCCAU--UCC-CGUUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 12176 0.73 0.206797
Target:  5'- aGCGGCGGCguucgcaaucgGGUuGGGuGCuAACGCCg -3'
miRNA:   3'- gCGCCGCCG-----------CCAuUCC-CGuUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 410 0.72 0.217115
Target:  5'- uGCGGUguugguaGGC-GUAGGGGCGuuGGCGUCCg -3'
miRNA:   3'- gCGCCG-------CCGcCAUUCCCGU--UUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 1240 0.72 0.223288
Target:  5'- gGCGGCGcuGCGGUugaacuGGGCGucuccgguGCGUCCg -3'
miRNA:   3'- gCGCCGC--CGCCAuu----CCCGUu-------UGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 26192 0.72 0.240884
Target:  5'- uGUGGUGGuuGUGAGGGUuccggUGCCCa -3'
miRNA:   3'- gCGCCGCCgcCAUUCCCGuuu--GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 47844 0.71 0.27953
Target:  5'- aGCGGCGGCGacaaggggGAGGGUgugaAAGuCGCUCa -3'
miRNA:   3'- gCGCCGCCGCca------UUCCCG----UUU-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 36665 0.71 0.27953
Target:  5'- gCGuCGGCGGCGucGUAucaaccggcuccGGGGUAGGCGCauCCa -3'
miRNA:   3'- -GC-GCCGCCGC--CAU------------UCCCGUUUGCG--GG- -5'
19651 3' -59.3 NC_004686.1 + 39129 0.7 0.293466
Target:  5'- uGCGGUGGCGaGUucauGGGCAcguAUGCgCa -3'
miRNA:   3'- gCGCCGCCGC-CAuu--CCCGUu--UGCGgG- -5'
19651 3' -59.3 NC_004686.1 + 19273 0.7 0.315376
Target:  5'- uGCGGUgugagGGCGGUGcGGGUGGugauuCGCUCg -3'
miRNA:   3'- gCGCCG-----CCGCCAUuCCCGUUu----GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 7274 0.7 0.320663
Target:  5'- aGCaGCGGCGaG-AAGGGCGGcggccagauuccguGCGCCg -3'
miRNA:   3'- gCGcCGCCGC-CaUUCCCGUU--------------UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 29845 0.69 0.330657
Target:  5'- uCGgGGCGGgGGgu-GGGCcAGGCGCa- -3'
miRNA:   3'- -GCgCCGCCgCCauuCCCG-UUUGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.