miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19651 3' -59.3 NC_004686.1 + 410 0.72 0.217115
Target:  5'- uGCGGUguugguaGGC-GUAGGGGCGuuGGCGUCCg -3'
miRNA:   3'- gCGCCG-------CCGcCAUUCCCGU--UUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 1240 0.72 0.223288
Target:  5'- gGCGGCGcuGCGGUugaacuGGGCGucuccgguGCGUCCg -3'
miRNA:   3'- gCGCCGC--CGCCAuu----CCCGUu-------UGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 1667 0.69 0.354587
Target:  5'- uGUGGCGGC-GUAcGGGaucAACGCCa -3'
miRNA:   3'- gCGCCGCCGcCAUuCCCgu-UUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 2091 0.68 0.424152
Target:  5'- uGuCGGgGGCGGUGuauGcGGCGAugacCGCUCg -3'
miRNA:   3'- gC-GCCgCCGCCAUu--C-CCGUUu---GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 2756 0.73 0.186457
Target:  5'- gGUGGUGuggucacaGCGGUGAGGGU---CGCCCa -3'
miRNA:   3'- gCGCCGC--------CGCCAUUCCCGuuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 3747 0.66 0.531748
Target:  5'- gGCGGCGGCGGacuGGuacgacgagcuGCGugaaAGCGCUg -3'
miRNA:   3'- gCGCCGCCGCCauuCC-----------CGU----UUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 3842 0.66 0.511339
Target:  5'- aCGCGcUGGCcgGGUGGGuGGCGGAaccguugaaacUGCCCg -3'
miRNA:   3'- -GCGCcGCCG--CCAUUC-CCGUUU-----------GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 4663 0.69 0.36283
Target:  5'- gGUGGCGGCGuUGAGcGCGucccACGCCg -3'
miRNA:   3'- gCGCCGCCGCcAUUCcCGUu---UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 4843 0.75 0.135324
Target:  5'- aGCGGCGGCGGUuccuaaccucugaAAGG--AAACGCCUc -3'
miRNA:   3'- gCGCCGCCGCCA-------------UUCCcgUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 5373 0.67 0.461858
Target:  5'- uCGuCGGCGuugaaguccaGCGGUcGGGGCAccauguuCGUCCa -3'
miRNA:   3'- -GC-GCCGC----------CGCCAuUCCCGUuu-----GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 6370 0.67 0.433407
Target:  5'- uGCGGCGuGCGGUGucuGCGu-CGCUCa -3'
miRNA:   3'- gCGCCGC-CGCCAUuccCGUuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 7274 0.7 0.320663
Target:  5'- aGCaGCGGCGaG-AAGGGCGGcggccagauuccguGCGCCg -3'
miRNA:   3'- gCGcCGCCGC-CaUUCCCGUU--------------UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 9109 0.96 0.004389
Target:  5'- aCGCGGCGGCGGUAAGGGaacACGCCCc -3'
miRNA:   3'- -GCGCCGCCGCCAUUCCCguuUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 11340 0.69 0.346476
Target:  5'- --aGGCGGCaaguGGGGCGAucCGCCCc -3'
miRNA:   3'- gcgCCGCCGccauUCCCGUUu-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 12176 0.73 0.206797
Target:  5'- aGCGGCGGCguucgcaaucgGGUuGGGuGCuAACGCCg -3'
miRNA:   3'- gCGCCGCCG-----------CCAuUCC-CGuUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 14750 0.66 0.531748
Target:  5'- aCGCGGUguaccGGCaGGUGGagaccGGGCAGcACGUCa -3'
miRNA:   3'- -GCGCCG-----CCG-CCAUU-----CCCGUU-UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 15676 0.66 0.521505
Target:  5'- cCGCGauGCGGUGGccc-GGCuGACGCCg -3'
miRNA:   3'- -GCGC--CGCCGCCauucCCGuUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 16869 0.68 0.387478
Target:  5'- uGCGuuGGCGGccggcaacacuauUGAGGGCugguauGAcCGCCCa -3'
miRNA:   3'- gCGCcgCCGCC-------------AUUCCCGu-----UU-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 17736 0.68 0.424152
Target:  5'- uCGCGGUGGCGc--AGGaGUucACGCCg -3'
miRNA:   3'- -GCGCCGCCGCcauUCC-CGuuUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 17770 0.69 0.338499
Target:  5'- gGgGuGCGGCGaGUccGGGGCcgauGAUGCCCg -3'
miRNA:   3'- gCgC-CGCCGC-CAu-UCCCGu---UUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.