miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19651 3' -59.3 NC_004686.1 + 21001 0.68 0.424152
Target:  5'- -uUGGgGGCGGUAcGGGUAGuuuCGCUg -3'
miRNA:   3'- gcGCCgCCGCCAUuCCCGUUu--GCGGg -5'
19651 3' -59.3 NC_004686.1 + 42778 0.69 0.35214
Target:  5'- gGCGGC-GCGGgcucagGAGuuggaagccaggcaGGCGGACGCCUc -3'
miRNA:   3'- gCGCCGcCGCCa-----UUC--------------CCGUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 1667 0.69 0.354587
Target:  5'- uGUGGCGGC-GUAcGGGaucAACGCCa -3'
miRNA:   3'- gCGCCGCCGcCAUuCCCgu-UUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 19077 0.69 0.36283
Target:  5'- -uUGGCGcaguuCGGUGAGGGCGGcugGCCCg -3'
miRNA:   3'- gcGCCGCc----GCCAUUCCCGUUug-CGGG- -5'
19651 3' -59.3 NC_004686.1 + 16869 0.68 0.387478
Target:  5'- uGCGuuGGCGGccggcaacacuauUGAGGGCugguauGAcCGCCCa -3'
miRNA:   3'- gCGCcgCCGCC-------------AUUCCCGu-----UU-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 19401 0.68 0.388348
Target:  5'- aGUGGUGGUGGUAucgcgccGGGUGGugGCg- -3'
miRNA:   3'- gCGCCGCCGCCAUu------CCCGUUugCGgg -5'
19651 3' -59.3 NC_004686.1 + 22187 0.68 0.388348
Target:  5'- gGCGGCaacGGCGGcaacGGcGGCAGcaGCCCa -3'
miRNA:   3'- gCGCCG---CCGCCau--UC-CCGUUugCGGG- -5'
19651 3' -59.3 NC_004686.1 + 18887 0.68 0.415016
Target:  5'- aGuCGGCGGUGGUAcguucGGCGAAggUGCCg -3'
miRNA:   3'- gC-GCCGCCGCCAUuc---CCGUUU--GCGGg -5'
19651 3' -59.3 NC_004686.1 + 2091 0.68 0.424152
Target:  5'- uGuCGGgGGCGGUGuauGcGGCGAugacCGCUCg -3'
miRNA:   3'- gC-GCCgCCGCCAUu--C-CCGUUu---GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 49602 0.69 0.346476
Target:  5'- -uCGGauGCGGaAGGGGCugcgacuGGCGCCCc -3'
miRNA:   3'- gcGCCgcCGCCaUUCCCGu------UUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 11340 0.69 0.346476
Target:  5'- --aGGCGGCaaguGGGGCGAucCGCCCc -3'
miRNA:   3'- gcgCCGCCGccauUCCCGUUu-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 21837 0.69 0.338499
Target:  5'- gGCGGC-GCGGgcGcGGGCGgcggcuccggacGGCGCUCg -3'
miRNA:   3'- gCGCCGcCGCCauU-CCCGU------------UUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 39779 0.77 0.106304
Target:  5'- cCGCGGCGaCGGUGGGGuGCAGucgaaccgcguuGCGCCg -3'
miRNA:   3'- -GCGCCGCcGCCAUUCC-CGUU------------UGCGGg -5'
19651 3' -59.3 NC_004686.1 + 21894 0.77 0.109248
Target:  5'- gGCGGCGGCGGUGgcGGuGGCgg-UGCCUa -3'
miRNA:   3'- gCGCCGCCGCCAU--UC-CCGuuuGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 22245 0.77 0.109248
Target:  5'- gCGCGGgcgcUGGCGGUAAGGGCGgcGGCGgCa -3'
miRNA:   3'- -GCGCC----GCCGCCAUUCCCGU--UUGCgGg -5'
19651 3' -59.3 NC_004686.1 + 4843 0.75 0.135324
Target:  5'- aGCGGCGGCGGUuccuaaccucugaAAGG--AAACGCCUc -3'
miRNA:   3'- gCGCCGCCGCCA-------------UUCCcgUUUGCGGG- -5'
19651 3' -59.3 NC_004686.1 + 12176 0.73 0.206797
Target:  5'- aGCGGCGGCguucgcaaucgGGUuGGGuGCuAACGCCg -3'
miRNA:   3'- gCGCCGCCG-----------CCAuUCC-CGuUUGCGGg -5'
19651 3' -59.3 NC_004686.1 + 47844 0.71 0.27953
Target:  5'- aGCGGCGGCGacaaggggGAGGGUgugaAAGuCGCUCa -3'
miRNA:   3'- gCGCCGCCGCca------UUCCCG----UUU-GCGGG- -5'
19651 3' -59.3 NC_004686.1 + 39129 0.7 0.293466
Target:  5'- uGCGGUGGCGaGUucauGGGCAcguAUGCgCa -3'
miRNA:   3'- gCGCCGCCGC-CAuu--CCCGUu--UGCGgG- -5'
19651 3' -59.3 NC_004686.1 + 19273 0.7 0.315376
Target:  5'- uGCGGUgugagGGCGGUGcGGGUGGugauuCGCUCg -3'
miRNA:   3'- gCGCCG-----CCGCCAUuCCCGUUu----GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.