miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19658 5' -56.7 NC_004686.1 + 24796 0.65 0.678037
Target:  5'- aGCCGgGgcucucggaaccggACuccucggagggAUCGCCCUCACCGGUGu -3'
miRNA:   3'- aCGGCgU--------------UG-----------UAGUGGGGGUGGCUACc -5'
19658 5' -56.7 NC_004686.1 + 48701 0.66 0.674806
Target:  5'- aGCCGUAGgAgaaCACCCCCgaaaacaaggauccgGCCGAg-- -3'
miRNA:   3'- aCGGCGUUgUa--GUGGGGG---------------UGGCUacc -5'
19658 5' -56.7 NC_004686.1 + 25976 0.66 0.670491
Target:  5'- cGCCauuguccccgGCAAUAUCACaCCC-CCGAaGGa -3'
miRNA:   3'- aCGG----------CGUUGUAGUGgGGGuGGCUaCC- -5'
19658 5' -56.7 NC_004686.1 + 798 0.66 0.659683
Target:  5'- uUGuCCGCGGCgGUCAggugugcgccuCCUCCACCGGacaggUGGu -3'
miRNA:   3'- -AC-GGCGUUG-UAGU-----------GGGGGUGGCU-----ACC- -5'
19658 5' -56.7 NC_004686.1 + 38385 0.66 0.659683
Target:  5'- cGCCGCGAUgcggaAUCACCUgCaACCGGa-- -3'
miRNA:   3'- aCGGCGUUG-----UAGUGGGgG-UGGCUacc -5'
19658 5' -56.7 NC_004686.1 + 35186 0.66 0.659683
Target:  5'- cGCCGCAGCAgcgaaacUACCCgUACCGc--- -3'
miRNA:   3'- aCGGCGUUGUa------GUGGGgGUGGCuacc -5'
19658 5' -56.7 NC_004686.1 + 35101 0.66 0.64885
Target:  5'- -cCCGUucCAUCGCCacaCCACCGuagGUGGc -3'
miRNA:   3'- acGGCGuuGUAGUGGg--GGUGGC---UACC- -5'
19658 5' -56.7 NC_004686.1 + 45082 0.66 0.638001
Target:  5'- gGCCGC-ACGUC-CCCCgACaugaCGAUGu -3'
miRNA:   3'- aCGGCGuUGUAGuGGGGgUG----GCUACc -5'
19658 5' -56.7 NC_004686.1 + 44258 0.66 0.638001
Target:  5'- cGCCGgGGCAgugUCAUCaCCACCGAg-- -3'
miRNA:   3'- aCGGCgUUGU---AGUGGgGGUGGCUacc -5'
19658 5' -56.7 NC_004686.1 + 25488 0.66 0.638001
Target:  5'- aGCCG-AAUGUCugCCCCAU--AUGGa -3'
miRNA:   3'- aCGGCgUUGUAGugGGGGUGgcUACC- -5'
19658 5' -56.7 NC_004686.1 + 34804 0.66 0.627148
Target:  5'- cGCCGagcaccaGACAcCGCCCCCAacuCCGAc-- -3'
miRNA:   3'- aCGGCg------UUGUaGUGGGGGU---GGCUacc -5'
19658 5' -56.7 NC_004686.1 + 49706 0.67 0.616298
Target:  5'- cGUCGCGACcguaGUCGUCCUCACCGGa-- -3'
miRNA:   3'- aCGGCGUUG----UAGUGGGGGUGGCUacc -5'
19658 5' -56.7 NC_004686.1 + 707 0.67 0.616298
Target:  5'- cGCCGCuugucGAUAUUGCCCgCCAguguuuuauccCCGAUGa -3'
miRNA:   3'- aCGGCG-----UUGUAGUGGG-GGU-----------GGCUACc -5'
19658 5' -56.7 NC_004686.1 + 33950 0.67 0.616298
Target:  5'- cGCCGCccuuACcgccagCGCCCgCGCCGuUGGu -3'
miRNA:   3'- aCGGCGu---UGua----GUGGGgGUGGCuACC- -5'
19658 5' -56.7 NC_004686.1 + 29959 0.67 0.594649
Target:  5'- cGCCGCcACAcCgACCCCgGCUGAgacaggcaccUGGg -3'
miRNA:   3'- aCGGCGuUGUaG-UGGGGgUGGCU----------ACC- -5'
19658 5' -56.7 NC_004686.1 + 8266 0.67 0.583866
Target:  5'- aGUCGUAACAaCAgUCCUGcCCGGUGGu -3'
miRNA:   3'- aCGGCGUUGUaGUgGGGGU-GGCUACC- -5'
19658 5' -56.7 NC_004686.1 + 46686 0.67 0.573123
Target:  5'- -uCCGaCAGCGUUGCcgaucuucuCCCCACgGAUGGa -3'
miRNA:   3'- acGGC-GUUGUAGUG---------GGGGUGgCUACC- -5'
19658 5' -56.7 NC_004686.1 + 33843 0.67 0.562426
Target:  5'- aGCCGUcACcgCuGCCgCCCGCCGAUc- -3'
miRNA:   3'- aCGGCGuUGuaG-UGG-GGGUGGCUAcc -5'
19658 5' -56.7 NC_004686.1 + 6006 0.67 0.561359
Target:  5'- aGCCGCAgaccugcccgaugACAUCGCCgCgAaugCGAUGGc -3'
miRNA:   3'- aCGGCGU-------------UGUAGUGGgGgUg--GCUACC- -5'
19658 5' -56.7 NC_004686.1 + 8969 0.68 0.551784
Target:  5'- cGuCCGCGACcugacgccUgGCUCCCACCGAacgGGg -3'
miRNA:   3'- aC-GGCGUUGu-------AgUGGGGGUGGCUa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.