miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19676 5' -60.1 NC_004686.1 + 17609 0.66 0.517065
Target:  5'- uCUGGuUCGaUCACGAGUgaCGCCGGCu -3'
miRNA:   3'- cGGUCuAGCcGGUGCUCAg-GCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 157 0.66 0.517065
Target:  5'- cGCCAGGcgacgCGGCCggguugGCGGGU--GCCGGg -3'
miRNA:   3'- -CGGUCUa----GCCGG------UGCUCAggCGGCCg -5'
19676 5' -60.1 NC_004686.1 + 49081 0.66 0.517065
Target:  5'- cGCCAGcguccuugUGGCCGcCGuGcaccCUGCCGGCu -3'
miRNA:   3'- -CGGUCua------GCCGGU-GCuCa---GGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 17249 0.66 0.517065
Target:  5'- uGCCAGcUC-GCCACGcuuGaUgCGCUGGCg -3'
miRNA:   3'- -CGGUCuAGcCGGUGCu--C-AgGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 5140 0.66 0.507032
Target:  5'- aGCCAGGaagucaagUgGGCUgACGAGUCuCGUcaacuCGGCg -3'
miRNA:   3'- -CGGUCU--------AgCCGG-UGCUCAG-GCG-----GCCG- -5'
19676 5' -60.1 NC_004686.1 + 33195 0.66 0.507032
Target:  5'- aGCCGGuauaGGCgCAgGGuUCCGuuGGCg -3'
miRNA:   3'- -CGGUCuag-CCG-GUgCUcAGGCggCCG- -5'
19676 5' -60.1 NC_004686.1 + 32144 0.66 0.497082
Target:  5'- cCCAGAcacUCGGCUuucCGGG--CGCCGGUg -3'
miRNA:   3'- cGGUCU---AGCCGGu--GCUCagGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 12349 0.66 0.497082
Target:  5'- uGCCGG--CGGCCACGA---CGaCCGGUg -3'
miRNA:   3'- -CGGUCuaGCCGGUGCUcagGC-GGCCG- -5'
19676 5' -60.1 NC_004686.1 + 32233 0.66 0.497082
Target:  5'- aGCCAGGUaccCGGCCGacucccCGAGcCCgaugccauuGUCGGCc -3'
miRNA:   3'- -CGGUCUA---GCCGGU------GCUCaGG---------CGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 18761 0.66 0.497082
Target:  5'- uGCUuuGGAgugCGGCCACGuGUagcgCGCuuCGGCg -3'
miRNA:   3'- -CGG--UCUa--GCCGGUGCuCAg---GCG--GCCG- -5'
19676 5' -60.1 NC_004686.1 + 11971 0.66 0.497082
Target:  5'- -aCAGAUCGGgaCGaacUGAGggauacauucCCGCCGGCg -3'
miRNA:   3'- cgGUCUAGCCg-GU---GCUCa---------GGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 28846 0.66 0.491154
Target:  5'- -aCGGGUUGGCgGCGaAGUggucguugacgguguUCGCCGGUc -3'
miRNA:   3'- cgGUCUAGCCGgUGC-UCA---------------GGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 9705 0.66 0.487221
Target:  5'- -aCAGAUCGGCaacgauggagACGAGUuuGUCuGCg -3'
miRNA:   3'- cgGUCUAGCCGg---------UGCUCAggCGGcCG- -5'
19676 5' -60.1 NC_004686.1 + 7103 0.66 0.483302
Target:  5'- aGCCGGcagggugcacggCGGCCACaAGgaCGCUGGCg -3'
miRNA:   3'- -CGGUCua----------GCCGGUGcUCagGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 18709 0.66 0.477453
Target:  5'- cGCgAGAUCaGCgACGAGUUCGa-GGUg -3'
miRNA:   3'- -CGgUCUAGcCGgUGCUCAGGCggCCG- -5'
19676 5' -60.1 NC_004686.1 + 409 0.66 0.473573
Target:  5'- cGCCGGG-CGGUCaaccgGCGGGUCCGagaggauagccgaUGGCu -3'
miRNA:   3'- -CGGUCUaGCCGG-----UGCUCAGGCg------------GCCG- -5'
19676 5' -60.1 NC_004686.1 + 3964 0.67 0.458215
Target:  5'- aCCGGAUCaGcCCAgGAGgaUCCGCaGGCc -3'
miRNA:   3'- cGGUCUAGcC-GGUgCUC--AGGCGgCCG- -5'
19676 5' -60.1 NC_004686.1 + 39826 0.67 0.458215
Target:  5'- cCCGGucgUGGCU--GGGaCCGCCGGCa -3'
miRNA:   3'- cGGUCua-GCCGGugCUCaGGCGGCCG- -5'
19676 5' -60.1 NC_004686.1 + 11200 0.67 0.458215
Target:  5'- uGCCGGcgCGuuCCAaacccaguuCGAGUCCGCCGauGCc -3'
miRNA:   3'- -CGGUCuaGCc-GGU---------GCUCAGGCGGC--CG- -5'
19676 5' -60.1 NC_004686.1 + 44042 0.67 0.439398
Target:  5'- cGCUGGccccgCGGCC-UGA--CCGCCGGCg -3'
miRNA:   3'- -CGGUCua---GCCGGuGCUcaGGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.