miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19697 5' -59.4 NC_004686.1 + 54365 0.66 0.525104
Target:  5'- gGGCACGGCAcuggaguUCGGCguCG-GGCaGGGCa -3'
miRNA:   3'- -CCGUGCCGU-------AGUCG--GCgCCGcUUCGg -5'
19697 5' -59.4 NC_004686.1 + 51481 0.7 0.318425
Target:  5'- cGGCcuCGGCAUUcGCCugcuccGCGGCGcggucugcGAGCCu -3'
miRNA:   3'- -CCGu-GCCGUAGuCGG------CGCCGC--------UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 51085 0.68 0.374756
Target:  5'- aGCgGCGGCAuucUCGuCCGCcGCGAGGCUg -3'
miRNA:   3'- cCG-UGCCGU---AGUcGGCGcCGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 49878 0.69 0.357992
Target:  5'- cGC-CGGCGacgaaGGCCGCGGCGAAc-- -3'
miRNA:   3'- cCGuGCCGUag---UCGGCGCCGCUUcgg -5'
19697 5' -59.4 NC_004686.1 + 49650 0.7 0.310917
Target:  5'- gGGCauGCGGCGaggaagaccgacUCAGCCGCGagcacgcaGCGcauguGGCCg -3'
miRNA:   3'- -CCG--UGCCGU------------AGUCGGCGC--------CGCu----UCGG- -5'
19697 5' -59.4 NC_004686.1 + 48700 0.7 0.318425
Target:  5'- gGGCcaGCGGCcguUCAgGCCcaggaauaccacGCGGuCGAAGCCc -3'
miRNA:   3'- -CCG--UGCCGu--AGU-CGG------------CGCC-GCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 47882 0.67 0.455491
Target:  5'- uGGCugGGCcUgAGggccugcCCGUGGCcAGGCCc -3'
miRNA:   3'- -CCGugCCGuAgUC-------GGCGCCGcUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 47822 0.67 0.428133
Target:  5'- uGGCGCGGgggcggauguCAUgAGCgGCGGCGAcaAGg- -3'
miRNA:   3'- -CCGUGCC----------GUAgUCGgCGCCGCU--UCgg -5'
19697 5' -59.4 NC_004686.1 + 45440 0.69 0.34981
Target:  5'- aGgGCGGCuugcGCCGCGGgGguGCCg -3'
miRNA:   3'- cCgUGCCGuaguCGGCGCCgCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 44087 0.74 0.173993
Target:  5'- --uGCGGCAgccgaAGCCGCGGUagccgcagcaGAAGCCg -3'
miRNA:   3'- ccgUGCCGUag---UCGGCGCCG----------CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 43674 0.67 0.428133
Target:  5'- cGGC-UGGCuggCAGCCuGCGGCccagGAgguGGCCc -3'
miRNA:   3'- -CCGuGCCGua-GUCGG-CGCCG----CU---UCGG- -5'
19697 5' -59.4 NC_004686.1 + 43543 0.67 0.466113
Target:  5'- aGGaCACGGCAgCGGCauugGUGGgGAguccucagugauAGCCa -3'
miRNA:   3'- -CC-GUGCCGUaGUCGg---CGCCgCU------------UCGG- -5'
19697 5' -59.4 NC_004686.1 + 43489 0.67 0.428133
Target:  5'- cGGCGCugucggugGGUAUC-GUCGCGacGCuGAAGCCg -3'
miRNA:   3'- -CCGUG--------CCGUAGuCGGCGC--CG-CUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 42735 0.66 0.49471
Target:  5'- cGGCACGGCAcCAuccgcGCCGCauccuuccccaucGG-GGAGCg -3'
miRNA:   3'- -CCGUGCCGUaGU-----CGGCG-------------CCgCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 42168 0.7 0.318425
Target:  5'- gGGCACcGCAaUAGuCCGCGGUGAuguGCa -3'
miRNA:   3'- -CCGUGcCGUaGUC-GGCGCCGCUu--CGg -5'
19697 5' -59.4 NC_004686.1 + 40506 0.69 0.34981
Target:  5'- cGGCcugcugcuGCGGCGUCAGCCG-GGCcaccGCa -3'
miRNA:   3'- -CCG--------UGCCGUAGUCGGCgCCGcuu-CGg -5'
19697 5' -59.4 NC_004686.1 + 39788 0.66 0.52613
Target:  5'- gGGCGgGGCuAUCGGCuUGUGGgaccgugacgaCGAAGCa -3'
miRNA:   3'- -CCGUgCCG-UAGUCG-GCGCC-----------GCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 39679 1.12 0.000236
Target:  5'- cGGCACGGCAUCAGCCGCGGCGAAGCCc -3'
miRNA:   3'- -CCGUGCCGUAGUCGGCGCCGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 39046 0.65 0.53333
Target:  5'- gGGCACGGUucugcUCaccgaagugcaagaAGCgUGCGGCGAAuGCa -3'
miRNA:   3'- -CCGUGCCGu----AG--------------UCG-GCGCCGCUU-CGg -5'
19697 5' -59.4 NC_004686.1 + 38956 0.67 0.456451
Target:  5'- aGCGUGGCG--AGCUGgcacCGGUGAAGCCg -3'
miRNA:   3'- cCGUGCCGUagUCGGC----GCCGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.