miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19702 5' -56.4 NC_004686.1 + 46046 0.66 0.688309
Target:  5'- aCGUCGCGccGAGccGCcCCAAgGcGGCGUCa -3'
miRNA:   3'- -GCGGCGC--UUC--UGuGGUUgCaCCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 3086 0.66 0.688309
Target:  5'- aGCCGCGGAuGCACCAccagauGCGUGuGaGUa -3'
miRNA:   3'- gCGGCGCUUcUGUGGU------UGCAC-CgCAg -5'
19702 5' -56.4 NC_004686.1 + 39924 0.66 0.67755
Target:  5'- uCGCCccuguUGAGGACAagCAcGCGUGGCGUg -3'
miRNA:   3'- -GCGGc----GCUUCUGUg-GU-UGCACCGCAg -5'
19702 5' -56.4 NC_004686.1 + 21830 0.66 0.67755
Target:  5'- gCGCCuCGgcGGCGCgGGCGcgGGCGg- -3'
miRNA:   3'- -GCGGcGCuuCUGUGgUUGCa-CCGCag -5'
19702 5' -56.4 NC_004686.1 + 48688 0.66 0.655914
Target:  5'- -aCCGCGAAGACgggGCCAGCG-GcCGUUc -3'
miRNA:   3'- gcGGCGCUUCUG---UGGUUGCaCcGCAG- -5'
19702 5' -56.4 NC_004686.1 + 47847 0.67 0.63854
Target:  5'- gGCgGCGAcaaGGGggagggugugaaaguCGCuCAGCGUGGCGUa -3'
miRNA:   3'- gCGgCGCU---UCU---------------GUG-GUUGCACCGCAg -5'
19702 5' -56.4 NC_004686.1 + 21264 0.67 0.634193
Target:  5'- gGCC-CG--GugACCAAUGUGGgGUCu -3'
miRNA:   3'- gCGGcGCuuCugUGGUUGCACCgCAG- -5'
19702 5' -56.4 NC_004686.1 + 95 0.67 0.623324
Target:  5'- uCGCCGgcgugaCGggGACGCUc-CGUGuGCGUUg -3'
miRNA:   3'- -GCGGC------GCuuCUGUGGuuGCAC-CGCAG- -5'
19702 5' -56.4 NC_004686.1 + 54071 0.67 0.623324
Target:  5'- uCGCCGCGA---CAUC-GCGuUGGCGUUg -3'
miRNA:   3'- -GCGGCGCUucuGUGGuUGC-ACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 9859 0.67 0.623324
Target:  5'- aCGCCGCGgcGAUcgcucaaacgucGCuCGACGauaUGGgGUCg -3'
miRNA:   3'- -GCGGCGCuuCUG------------UG-GUUGC---ACCgCAG- -5'
19702 5' -56.4 NC_004686.1 + 53567 0.67 0.612463
Target:  5'- -aCCGCGAcGGCGCCGAUuccacucaccaGUGGCcUCg -3'
miRNA:   3'- gcGGCGCUuCUGUGGUUG-----------CACCGcAG- -5'
19702 5' -56.4 NC_004686.1 + 13691 0.67 0.612463
Target:  5'- aGCCGCGGcgcuGGuccCGCC--CGUGGgGUCa -3'
miRNA:   3'- gCGGCGCU----UCu--GUGGuuGCACCgCAG- -5'
19702 5' -56.4 NC_004686.1 + 3724 0.67 0.612463
Target:  5'- aCGUggaGCGAAGcCGCCAugGcGGCGg- -3'
miRNA:   3'- -GCGg--CGCUUCuGUGGUugCaCCGCag -5'
19702 5' -56.4 NC_004686.1 + 51102 0.67 0.5908
Target:  5'- cCGCCGCGAggcuguaccuGGACAgCCugGACuGUGGUGg- -3'
miRNA:   3'- -GCGGCGCU----------UCUGU-GG--UUG-CACCGCag -5'
19702 5' -56.4 NC_004686.1 + 50457 0.67 0.584325
Target:  5'- gGCCGCauguuccccuGGGACACCcugucGgagcuggagaaggauGCGUGGCGUCg -3'
miRNA:   3'- gCGGCGc---------UUCUGUGG-----U---------------UGCACCGCAG- -5'
19702 5' -56.4 NC_004686.1 + 46396 0.67 0.580015
Target:  5'- uGuCCaGUGggGACGCCGGCGgcgaccgcagUGGCGg- -3'
miRNA:   3'- gC-GG-CGCuuCUGUGGUUGC----------ACCGCag -5'
19702 5' -56.4 NC_004686.1 + 43246 0.67 0.578939
Target:  5'- uGCCGCGGacgugcuggucacAGACccGCCAuACG-GGCGUg -3'
miRNA:   3'- gCGGCGCU-------------UCUG--UGGU-UGCaCCGCAg -5'
19702 5' -56.4 NC_004686.1 + 35246 0.68 0.562851
Target:  5'- gCGCCgagcuggcugagGCGAAGGCGuuggaguugucgguuCCGGCGUcGGCGUg -3'
miRNA:   3'- -GCGG------------CGCUUCUGU---------------GGUUGCA-CCGCAg -5'
19702 5' -56.4 NC_004686.1 + 16435 0.68 0.55858
Target:  5'- uCGCCGCGGcguccguguaggAGGCGCCGuCGUcgagcaGGCGg- -3'
miRNA:   3'- -GCGGCGCU------------UCUGUGGUuGCA------CCGCag -5'
19702 5' -56.4 NC_004686.1 + 34378 0.68 0.55858
Target:  5'- gCGCCGcCGAGGcGCACCcGCaaGuGCGUCg -3'
miRNA:   3'- -GCGGC-GCUUC-UGUGGuUGcaC-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.