miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19705 5' -59.6 NC_004686.1 + 42745 0.66 0.5312
Target:  5'- uGCCGCUGaCGguCCuacgguucaggaggcGUUGGCGgcgCGGGCUCa -3'
miRNA:   3'- -CGGCGGC-GC--GG---------------UAGCCGCa--GCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 9788 0.66 0.527103
Target:  5'- uGCCGCCacugcgguCGCCGcCGGCGUCcccACUg -3'
miRNA:   3'- -CGGCGGc-------GCGGUaGCCGCAGcu-UGAg -5'
19705 5' -59.6 NC_004686.1 + 27710 0.66 0.527103
Target:  5'- uGCUGUCGCuauucgGCaacccaGUCGGCGaaGGGCUCg -3'
miRNA:   3'- -CGGCGGCG------CGg-----UAGCCGCagCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 37835 0.66 0.527103
Target:  5'- gGCCGUCGCcCCAUgCGGCGggaCGAcgGCc- -3'
miRNA:   3'- -CGGCGGCGcGGUA-GCCGCa--GCU--UGag -5'
19705 5' -59.6 NC_004686.1 + 5361 0.66 0.527103
Target:  5'- -aCGgauUCGaCGUCGUCGGCGUUGAAgUCc -3'
miRNA:   3'- cgGC---GGC-GCGGUAGCCGCAGCUUgAG- -5'
19705 5' -59.6 NC_004686.1 + 41499 0.66 0.526081
Target:  5'- aGCCGCCGUcguauccggacaaGUCAUCGGacacguGUCGAugGCg- -3'
miRNA:   3'- -CGGCGGCG-------------CGGUAGCCg-----CAGCU--UGag -5'
19705 5' -59.6 NC_004686.1 + 6320 0.66 0.506807
Target:  5'- uUCGCCGCgGCCuucgucgcCGGCGagUCGggUUCc -3'
miRNA:   3'- cGGCGGCG-CGGua------GCCGC--AGCuuGAG- -5'
19705 5' -59.6 NC_004686.1 + 44036 0.66 0.496785
Target:  5'- cGCCGCCGCuggccccgcgGCCugaccgcCGGCGcCGaAACUg -3'
miRNA:   3'- -CGGCGGCG----------CGGua-----GCCGCaGC-UUGAg -5'
19705 5' -59.6 NC_004686.1 + 20951 0.66 0.486852
Target:  5'- cGCCuUCGCucaGCCAgcUCGGCG-CGAGuCUCa -3'
miRNA:   3'- -CGGcGGCG---CGGU--AGCCGCaGCUU-GAG- -5'
19705 5' -59.6 NC_004686.1 + 31180 0.66 0.486852
Target:  5'- aGCCGgacacugguCCGCGCCAUuucgugCGGCcGUCGucGCUg -3'
miRNA:   3'- -CGGC---------GGCGCGGUA------GCCG-CAGCu-UGAg -5'
19705 5' -59.6 NC_004686.1 + 26723 0.66 0.486852
Target:  5'- uGCUGUCGcCGUgAUCGGCGagaAACUCg -3'
miRNA:   3'- -CGGCGGC-GCGgUAGCCGCagcUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 34364 0.66 0.486852
Target:  5'- cGCCGcCCGCGCCcgCGcCGcCGAGg-- -3'
miRNA:   3'- -CGGC-GGCGCGGuaGCcGCaGCUUgag -5'
19705 5' -59.6 NC_004686.1 + 38080 0.66 0.477014
Target:  5'- uGCCGCCGCaCCAUUGGgagaaCGAAC-Cg -3'
miRNA:   3'- -CGGCGGCGcGGUAGCCgca--GCUUGaG- -5'
19705 5' -59.6 NC_004686.1 + 2123 0.67 0.471159
Target:  5'- cGCCGCCcgucugggaacagucGCGCaacgCAUCGGCGUaagCGGcAUUCg -3'
miRNA:   3'- -CGGCGG---------------CGCG----GUAGCCGCA---GCU-UGAG- -5'
19705 5' -59.6 NC_004686.1 + 36658 0.67 0.467276
Target:  5'- uCCgGCgGCGUCggCGGCGUCGuaucaaccGGCUCc -3'
miRNA:   3'- cGG-CGgCGCGGuaGCCGCAGC--------UUGAG- -5'
19705 5' -59.6 NC_004686.1 + 38873 0.67 0.467276
Target:  5'- aGCCGCaGUGCCugcaGUgGGCGUUGAAg-- -3'
miRNA:   3'- -CGGCGgCGCGG----UAgCCGCAGCUUgag -5'
19705 5' -59.6 NC_004686.1 + 34170 0.67 0.467276
Target:  5'- uGUCGaCGCGCCgccGUCGGCGcCGucCUUg -3'
miRNA:   3'- -CGGCgGCGCGG---UAGCCGCaGCuuGAG- -5'
19705 5' -59.6 NC_004686.1 + 35316 0.67 0.438698
Target:  5'- gGCUGCCgGUGaCUAUgCGGUGUCGGAUg- -3'
miRNA:   3'- -CGGCGG-CGC-GGUA-GCCGCAGCUUGag -5'
19705 5' -59.6 NC_004686.1 + 17447 0.67 0.438698
Target:  5'- gGCUuuGCgGCGCCAgucgUCGGUGU-GAACUUc -3'
miRNA:   3'- -CGG--CGgCGCGGU----AGCCGCAgCUUGAG- -5'
19705 5' -59.6 NC_004686.1 + 41689 0.67 0.438698
Target:  5'- uGgCGCCGCGCCA-CGGCucCGGAUc- -3'
miRNA:   3'- -CgGCGGCGCGGUaGCCGcaGCUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.