miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19717 5' -58.4 NC_004686.1 + 34068 0.66 0.576659
Target:  5'- -aGCGguGCCGCCGa----GGCCGCGc -3'
miRNA:   3'- gaCGCuuUGGUGGCcuaggCCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 19549 0.66 0.576659
Target:  5'- -cGcCGAcGCCGCCGGAaaCGGuuGUg -3'
miRNA:   3'- gaC-GCUuUGGUGGCCUagGCCggCGu -5'
19717 5' -58.4 NC_004686.1 + 43698 0.66 0.566043
Target:  5'- uUGCGGAuccguUCGCCGGuUCCGGUucgacguugguCGCGg -3'
miRNA:   3'- gACGCUUu----GGUGGCCuAGGCCG-----------GCGU- -5'
19717 5' -58.4 NC_004686.1 + 24444 0.66 0.566043
Target:  5'- -cGUGAAGCgCugCGGcggCGGCCGCc -3'
miRNA:   3'- gaCGCUUUG-GugGCCuagGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 14043 0.66 0.566043
Target:  5'- uUGCGGugcCCGCUGG-UCgGGCCGg- -3'
miRNA:   3'- gACGCUuu-GGUGGCCuAGgCCGGCgu -5'
19717 5' -58.4 NC_004686.1 + 46190 0.66 0.564984
Target:  5'- -gGUGGAauguccuACCugCGGAUCUGaGCCGg- -3'
miRNA:   3'- gaCGCUU-------UGGugGCCUAGGC-CGGCgu -5'
19717 5' -58.4 NC_004686.1 + 33886 0.66 0.555477
Target:  5'- -gGCGggGCCgucGCUGGuUCCGuuguuGCCGCc -3'
miRNA:   3'- gaCGCuuUGG---UGGCCuAGGC-----CGGCGu -5'
19717 5' -58.4 NC_004686.1 + 33434 0.66 0.534529
Target:  5'- -gGUGGgcuGACCACCGGugaCCGcgauaGCCGCGg -3'
miRNA:   3'- gaCGCU---UUGGUGGCCua-GGC-----CGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 12105 0.66 0.524159
Target:  5'- gCUGCG--GCUACCGcGGcUUCGGCUGCc -3'
miRNA:   3'- -GACGCuuUGGUGGC-CU-AGGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 30290 0.67 0.493538
Target:  5'- -cGCGAuggaACCGGAUCUcgccaguagGGCCGUAa -3'
miRNA:   3'- gaCGCUuuggUGGCCUAGG---------CCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 3730 0.67 0.483512
Target:  5'- -aGCGAAGCCGCCauGGcggCGGCgGCGg -3'
miRNA:   3'- gaCGCUUUGGUGG--CCuagGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 12466 0.67 0.473585
Target:  5'- aUGgGgcACCGCCGGGaCCGGgggcgccuacccCCGCAc -3'
miRNA:   3'- gACgCuuUGGUGGCCUaGGCC------------GGCGU- -5'
19717 5' -58.4 NC_004686.1 + 48902 0.67 0.463762
Target:  5'- -cGCGGAcGgCGCaCGGaAUCUGGCCGCc -3'
miRNA:   3'- gaCGCUU-UgGUG-GCC-UAGGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 1615 0.68 0.454046
Target:  5'- -cGCGGGACCAgUGGAacaacCUGGCgGCGg -3'
miRNA:   3'- gaCGCUUUGGUgGCCUa----GGCCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 8885 0.68 0.425582
Target:  5'- gCUGCgGAAACCA-CGGGUCguaGGCgGCGc -3'
miRNA:   3'- -GACG-CUUUGGUgGCCUAGg--CCGgCGU- -5'
19717 5' -58.4 NC_004686.1 + 44051 0.68 0.416332
Target:  5'- -cGCGGccuGACCGCCGGcgCCGaaacugcccGCCGUu -3'
miRNA:   3'- gaCGCU---UUGGUGGCCuaGGC---------CGGCGu -5'
19717 5' -58.4 NC_004686.1 + 12026 0.69 0.398207
Target:  5'- uUGUGAGAUCACCcaugcccGGUCCGGCacCGCGu -3'
miRNA:   3'- gACGCUUUGGUGGc------CUAGGCCG--GCGU- -5'
19717 5' -58.4 NC_004686.1 + 3948 0.69 0.394644
Target:  5'- -gGCGAacuacacGAUCACCGGAucagcccaggaggaUCCgcaGGCCGCGg -3'
miRNA:   3'- gaCGCU-------UUGGUGGCCU--------------AGG---CCGGCGU- -5'
19717 5' -58.4 NC_004686.1 + 33599 0.69 0.38495
Target:  5'- -gGCGGuggggguGACCACCGGucccgacaagggCUGGCCGCc -3'
miRNA:   3'- gaCGCU-------UUGGUGGCCua----------GGCCGGCGu -5'
19717 5' -58.4 NC_004686.1 + 44382 0.69 0.37973
Target:  5'- uUGCGGAuccguucGCCGguuCCGGAUCCacguuGGUCGCGg -3'
miRNA:   3'- gACGCUU-------UGGU---GGCCUAGG-----CCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.