miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19722 3' -54.1 NC_004686.1 + 42012 0.66 0.815335
Target:  5'- aGGCGCGggGGaacuggaauGCAGCCgGCAACCa -3'
miRNA:   3'- -CUGCGUagCCagc------UGUUGGgCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 54584 0.66 0.814402
Target:  5'- cGACGaCAUCGGcuuggugcacaUCGACugcGACCUGUAcgacagcACCa -3'
miRNA:   3'- -CUGC-GUAGCC-----------AGCUG---UUGGGCGU-------UGG- -5'
19722 3' -54.1 NC_004686.1 + 18956 0.66 0.805925
Target:  5'- cGGCGCGggagCGGggGAaccauGCCCGC-GCCg -3'
miRNA:   3'- -CUGCGUa---GCCagCUgu---UGGGCGuUGG- -5'
19722 3' -54.1 NC_004686.1 + 39256 0.66 0.805925
Target:  5'- -cCGCAUgGGUUgGACcGCCaCGCAgaucGCCg -3'
miRNA:   3'- cuGCGUAgCCAG-CUGuUGG-GCGU----UGG- -5'
19722 3' -54.1 NC_004686.1 + 6242 0.66 0.800193
Target:  5'- cGGCGC--CGGUCG---GCCCGCAugggagaugguuuucGCCa -3'
miRNA:   3'- -CUGCGuaGCCAGCuguUGGGCGU---------------UGG- -5'
19722 3' -54.1 NC_004686.1 + 36941 0.66 0.796335
Target:  5'- uACGCA-CGGUCuGugAAgUCGguGCCg -3'
miRNA:   3'- cUGCGUaGCCAG-CugUUgGGCguUGG- -5'
19722 3' -54.1 NC_004686.1 + 22700 0.66 0.796335
Target:  5'- -gUGUAUCGGgcgGACAGCCgGUggUCa -3'
miRNA:   3'- cuGCGUAGCCag-CUGUUGGgCGuuGG- -5'
19722 3' -54.1 NC_004686.1 + 22532 0.66 0.786574
Target:  5'- cGACGCAgcacGUCcuccuACAACCCGCcgcAGCCg -3'
miRNA:   3'- -CUGCGUagc-CAGc----UGUUGGGCG---UUGG- -5'
19722 3' -54.1 NC_004686.1 + 45604 0.66 0.786574
Target:  5'- --aGCAUCGGcgaccugcgCGGCGGCUuucgucuuCGCAGCCc -3'
miRNA:   3'- cugCGUAGCCa--------GCUGUUGG--------GCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 21969 0.66 0.776653
Target:  5'- cGACGCG-CGGacUCGGCGgcGCUgGCGguGCCa -3'
miRNA:   3'- -CUGCGUaGCC--AGCUGU--UGGgCGU--UGG- -5'
19722 3' -54.1 NC_004686.1 + 21244 0.66 0.776653
Target:  5'- cGGCGUA-CGGaUUGACGuucgGCCCgGUGACCa -3'
miRNA:   3'- -CUGCGUaGCC-AGCUGU----UGGG-CGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 19838 0.66 0.776653
Target:  5'- aGCGCGUCGaGuucuUCGACGgucucaaucACCCugggacGCAGCCg -3'
miRNA:   3'- cUGCGUAGC-C----AGCUGU---------UGGG------CGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 38206 0.67 0.766582
Target:  5'- cGACGCAUCa-UCGAaauaaaacguuCcACCCGUGGCCg -3'
miRNA:   3'- -CUGCGUAGccAGCU-----------GuUGGGCGUUGG- -5'
19722 3' -54.1 NC_004686.1 + 1326 0.67 0.766582
Target:  5'- uGACGCGUUucaGGUUGGCGgGCCgGCGcggguccuuACCg -3'
miRNA:   3'- -CUGCGUAG---CCAGCUGU-UGGgCGU---------UGG- -5'
19722 3' -54.1 NC_004686.1 + 29937 0.67 0.766582
Target:  5'- -gUGC-UCGGccugaUCGGCAAgCCGCcGCCa -3'
miRNA:   3'- cuGCGuAGCC-----AGCUGUUgGGCGuUGG- -5'
19722 3' -54.1 NC_004686.1 + 16864 0.67 0.766582
Target:  5'- --aGUGUUGcGUUGGCGGCCgGCAACa -3'
miRNA:   3'- cugCGUAGC-CAGCUGUUGGgCGUUGg -5'
19722 3' -54.1 NC_004686.1 + 4034 0.67 0.766582
Target:  5'- -uUGCAUCauGGUCG-CcuCCCGCGGCg -3'
miRNA:   3'- cuGCGUAG--CCAGCuGuuGGGCGUUGg -5'
19722 3' -54.1 NC_004686.1 + 51475 0.67 0.756375
Target:  5'- uGCGC-UCGGccUCGGCAuucGCCUGCu-CCg -3'
miRNA:   3'- cUGCGuAGCC--AGCUGU---UGGGCGuuGG- -5'
19722 3' -54.1 NC_004686.1 + 27432 0.67 0.756375
Target:  5'- -cCGC--CGGggucucauguUCGGCAACCCGCGccgcGCCa -3'
miRNA:   3'- cuGCGuaGCC----------AGCUGUUGGGCGU----UGG- -5'
19722 3' -54.1 NC_004686.1 + 23047 0.67 0.735591
Target:  5'- uGugGCGUUGGUgGcUAGCCCcgGCGGCa -3'
miRNA:   3'- -CugCGUAGCCAgCuGUUGGG--CGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.