miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19735 5' -58.5 NC_004687.1 + 11588 0.66 0.845641
Target:  5'- -cUCGGUC-CUUGAGCCGGucauagauCUGcCGg -3'
miRNA:   3'- gaGGCCAGuGGACUCGGCCu-------GACuGC- -5'
19735 5' -58.5 NC_004687.1 + 136846 0.66 0.845641
Target:  5'- gUCCGGcggCACCUGGucggugguGCUGGAa-GACGa -3'
miRNA:   3'- gAGGCCa--GUGGACU--------CGGCCUgaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 15368 0.66 0.845641
Target:  5'- -aCCGGUgACaucaUGAGCCGcGAUgGACa -3'
miRNA:   3'- gaGGCCAgUGg---ACUCGGC-CUGaCUGc -5'
19735 5' -58.5 NC_004687.1 + 72127 0.66 0.845641
Target:  5'- -cUCGGUggagaACCUGccGCCGGACUacGACGa -3'
miRNA:   3'- gaGGCCAg----UGGACu-CGGCCUGA--CUGC- -5'
19735 5' -58.5 NC_004687.1 + 131313 0.66 0.845641
Target:  5'- aUCgCGGcCACC-GAGCCGGACa---- -3'
miRNA:   3'- gAG-GCCaGUGGaCUCGGCCUGacugc -5'
19735 5' -58.5 NC_004687.1 + 18483 0.66 0.843289
Target:  5'- aCUCCGG-CACCgcccGCCGGuacgcccuggcccuGCUGGCc -3'
miRNA:   3'- -GAGGCCaGUGGacu-CGGCC--------------UGACUGc -5'
19735 5' -58.5 NC_004687.1 + 118900 0.66 0.837738
Target:  5'- --aCGGagGCUucuuUGGGCCGGACcGACGc -3'
miRNA:   3'- gagGCCagUGG----ACUCGGCCUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 154561 0.66 0.837738
Target:  5'- gUCCGuucGUUACCgaggaccccGAGCUGGACUucGACGa -3'
miRNA:   3'- gAGGC---CAGUGGa--------CUCGGCCUGA--CUGC- -5'
19735 5' -58.5 NC_004687.1 + 58695 0.66 0.829657
Target:  5'- -gCCGGUC----GAGCCGGGCUGGg- -3'
miRNA:   3'- gaGGCCAGuggaCUCGGCCUGACUgc -5'
19735 5' -58.5 NC_004687.1 + 131983 0.66 0.829657
Target:  5'- gUCCGGUggcagACCUGcgugcgagaGGCCGGACagGACc -3'
miRNA:   3'- gAGGCCAg----UGGAC---------UCGGCCUGa-CUGc -5'
19735 5' -58.5 NC_004687.1 + 69961 0.66 0.821406
Target:  5'- --aUGGUCACCUcguugcGGGCCGaGACcGGCGc -3'
miRNA:   3'- gagGCCAGUGGA------CUCGGC-CUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 71802 0.66 0.812992
Target:  5'- cCUCCcg--GCCUG-GCCGGGCUGAUc -3'
miRNA:   3'- -GAGGccagUGGACuCGGCCUGACUGc -5'
19735 5' -58.5 NC_004687.1 + 124268 0.66 0.812992
Target:  5'- cCUgCGGgcgaGCCUGGGCCaGGCUGuGCa -3'
miRNA:   3'- -GAgGCCag--UGGACUCGGcCUGAC-UGc -5'
19735 5' -58.5 NC_004687.1 + 88210 0.66 0.812992
Target:  5'- -gCCGGUggcaGCUUGGcGCCGGACUcgaaGGCGu -3'
miRNA:   3'- gaGGCCAg---UGGACU-CGGCCUGA----CUGC- -5'
19735 5' -58.5 NC_004687.1 + 144645 0.66 0.812992
Target:  5'- -gUCGGuaUCGCCUGGcacGCCGGGCagGGCa -3'
miRNA:   3'- gaGGCC--AGUGGACU---CGGCCUGa-CUGc -5'
19735 5' -58.5 NC_004687.1 + 112798 0.67 0.804422
Target:  5'- gCUCCGG-CGCCcaUGAGCgGGAUgaggaaGGCa -3'
miRNA:   3'- -GAGGCCaGUGG--ACUCGgCCUGa-----CUGc -5'
19735 5' -58.5 NC_004687.1 + 80965 0.67 0.804422
Target:  5'- -gCCGGUUggccgucaugGCCaUGAGCugCGGGCUGGCc -3'
miRNA:   3'- gaGGCCAG----------UGG-ACUCG--GCCUGACUGc -5'
19735 5' -58.5 NC_004687.1 + 141395 0.67 0.804422
Target:  5'- -gCCGGugaUCACCgugcGGGCCGGA--GACGa -3'
miRNA:   3'- gaGGCC---AGUGGa---CUCGGCCUgaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 135310 0.67 0.795704
Target:  5'- -gUCGGUCACC--AGCCGGG-UGGCa -3'
miRNA:   3'- gaGGCCAGUGGacUCGGCCUgACUGc -5'
19735 5' -58.5 NC_004687.1 + 111539 0.67 0.795704
Target:  5'- gUCCgaGGUCACCUcGGGCUucgGGGC-GGCGg -3'
miRNA:   3'- gAGG--CCAGUGGA-CUCGG---CCUGaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.