miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19736 3' -54.9 NC_004687.1 + 15725 0.66 0.951343
Target:  5'- cGCCGAGGccaacggcuggACccGCCGGGUUgaaagC-CCGUg -3'
miRNA:   3'- -CGGCUCU-----------UGuaCGGUCCAGa----GaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 85945 0.66 0.951343
Target:  5'- cGUCGGacGCGcGCC-GGUCUCggcCCGCa -3'
miRNA:   3'- -CGGCUcuUGUaCGGuCCAGAGa--GGCG- -5'
19736 3' -54.9 NC_004687.1 + 107104 0.66 0.951343
Target:  5'- cGCCGAGGACcuccugGcCCAGGUggCcCCGUc -3'
miRNA:   3'- -CGGCUCUUGua----C-GGUCCAgaGaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 132156 0.66 0.948845
Target:  5'- aCCGcAGGACcuugacggccuggGCCAGGUCggcgCUgCGCa -3'
miRNA:   3'- cGGC-UCUUGua-----------CGGUCCAGa---GAgGCG- -5'
19736 3' -54.9 NC_004687.1 + 140047 0.66 0.947133
Target:  5'- aGCCGAcGucgGUGCCcGGUC-CUCgGCg -3'
miRNA:   3'- -CGGCU-CuugUACGGuCCAGaGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 130586 0.66 0.947133
Target:  5'- cGUCGGGAuCGU-CCAGGUCauagucCUCCGg -3'
miRNA:   3'- -CGGCUCUuGUAcGGUCCAGa-----GAGGCg -5'
19736 3' -54.9 NC_004687.1 + 54187 0.66 0.947133
Target:  5'- cCCGAGcu-GUGCCAGGccaagUUCUCgGCc -3'
miRNA:   3'- cGGCUCuugUACGGUCCa----GAGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 150656 0.66 0.947133
Target:  5'- uGUCGAccuGACGUGCggccugcaGGGUCUCcagCCGCu -3'
miRNA:   3'- -CGGCUc--UUGUACGg-------UCCAGAGa--GGCG- -5'
19736 3' -54.9 NC_004687.1 + 70898 0.66 0.947133
Target:  5'- uCCG-GGACGgugGCCGGGUC-CggCGCg -3'
miRNA:   3'- cGGCuCUUGUa--CGGUCCAGaGagGCG- -5'
19736 3' -54.9 NC_004687.1 + 39699 0.66 0.947133
Target:  5'- aGCCG-GGGCAUgGCCAGcaguuugccGUCaaUCUCgGCg -3'
miRNA:   3'- -CGGCuCUUGUA-CGGUC---------CAG--AGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 84775 0.66 0.947133
Target:  5'- gGUCGAGGugAUGUCGccGGUCUCcggaGCg -3'
miRNA:   3'- -CGGCUCUugUACGGU--CCAGAGagg-CG- -5'
19736 3' -54.9 NC_004687.1 + 15746 0.66 0.946699
Target:  5'- uCCGAGAGCAgguucugcacgucUGCCGGGcuggcCUUgcCCGCc -3'
miRNA:   3'- cGGCUCUUGU-------------ACGGUCCa----GAGa-GGCG- -5'
19736 3' -54.9 NC_004687.1 + 16793 0.66 0.945383
Target:  5'- cGCCGGGGuccacGCccGCCGGGUCguaguaguagacgCUgCCGUc -3'
miRNA:   3'- -CGGCUCU-----UGuaCGGUCCAGa------------GA-GGCG- -5'
19736 3' -54.9 NC_004687.1 + 102207 0.66 0.944494
Target:  5'- aGCCgGAGGGCcuuguagacguccuUGCCcaGGGUCUUgggaCCGCa -3'
miRNA:   3'- -CGG-CUCUUGu-------------ACGG--UCCAGAGa---GGCG- -5'
19736 3' -54.9 NC_004687.1 + 139415 0.66 0.942688
Target:  5'- cGCCGuGAGCAgcaagGCCGa-UCagUCCGCg -3'
miRNA:   3'- -CGGCuCUUGUa----CGGUccAGagAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 11261 0.66 0.939909
Target:  5'- gGCCGGGAuagcugcccugcccgGCGUGCCAGG-CgauaCCGa -3'
miRNA:   3'- -CGGCUCU---------------UGUACGGUCCaGaga-GGCg -5'
19736 3' -54.9 NC_004687.1 + 44400 0.66 0.938008
Target:  5'- cGCCGAcgcuGGACcgGCU-GGUCUCUUCc- -3'
miRNA:   3'- -CGGCU----CUUGuaCGGuCCAGAGAGGcg -5'
19736 3' -54.9 NC_004687.1 + 16631 0.66 0.938008
Target:  5'- gGCUGAGcGCG-GUCAGGUCa--CCGCu -3'
miRNA:   3'- -CGGCUCuUGUaCGGUCCAGagaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 141677 0.66 0.93309
Target:  5'- aGCCGuc-GCGUuCCAGGUC-CUCgGCc -3'
miRNA:   3'- -CGGCucuUGUAcGGUCCAGaGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 143164 0.66 0.93309
Target:  5'- cGUCGAGAcggugcucACcgGCgGGGUCUCgcgUgGCu -3'
miRNA:   3'- -CGGCUCU--------UGuaCGgUCCAGAGa--GgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.