miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 3' -56.5 NC_004687.1 + 59540 0.66 0.899646
Target:  5'- -gACGaCCAUCC-CGGCaCGGGUGaccGACg -3'
miRNA:   3'- uaUGCaGGUAGGcGUUG-GCCCAC---CUG- -5'
19738 3' -56.5 NC_004687.1 + 60765 0.66 0.893112
Target:  5'- cGUACGUCUucaaCgGCu-CCGGuGUGGGCa -3'
miRNA:   3'- -UAUGCAGGua--GgCGuuGGCC-CACCUG- -5'
19738 3' -56.5 NC_004687.1 + 124299 0.66 0.893112
Target:  5'- cUugG-CCAUCCcaaacGUGAUCGGGUGGuCg -3'
miRNA:   3'- uAugCaGGUAGG-----CGUUGGCCCACCuG- -5'
19738 3' -56.5 NC_004687.1 + 30570 0.66 0.886349
Target:  5'- ---aGUCaAUCCGUggUCGGGUGGu- -3'
miRNA:   3'- uaugCAGgUAGGCGuuGGCCCACCug -5'
19738 3' -56.5 NC_004687.1 + 12245 0.66 0.886349
Target:  5'- --cCGUUgG-CCGCGACCGGG-GuGACg -3'
miRNA:   3'- uauGCAGgUaGGCGUUGGCCCaC-CUG- -5'
19738 3' -56.5 NC_004687.1 + 106608 0.66 0.879362
Target:  5'- aGUACGUCUAccUCgggCGCAACCGGcacaaGUGGGu -3'
miRNA:   3'- -UAUGCAGGU--AG---GCGUUGGCC-----CACCUg -5'
19738 3' -56.5 NC_004687.1 + 135865 0.66 0.879362
Target:  5'- gGUGCGUCUgguggagcaGUCCG-AGCUGGGcccGGGCg -3'
miRNA:   3'- -UAUGCAGG---------UAGGCgUUGGCCCa--CCUG- -5'
19738 3' -56.5 NC_004687.1 + 74925 0.66 0.879362
Target:  5'- --uUGUCgGUCgGCGugCGGGUGuucGACa -3'
miRNA:   3'- uauGCAGgUAGgCGUugGCCCAC---CUG- -5'
19738 3' -56.5 NC_004687.1 + 17761 0.66 0.872155
Target:  5'- gGUGCuUCCA-CUGCGGCaaGGUGGGCu -3'
miRNA:   3'- -UAUGcAGGUaGGCGUUGgcCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 117965 0.66 0.872155
Target:  5'- -gACGUCaaccaGUCCGguGCCGGGUucACc -3'
miRNA:   3'- uaUGCAGg----UAGGCguUGGCCCAccUG- -5'
19738 3' -56.5 NC_004687.1 + 18137 0.66 0.865485
Target:  5'- cUGCGUCUcaacaucaacgacaCCGguGCCGGuGUGGGCc -3'
miRNA:   3'- uAUGCAGGua------------GGCguUGGCC-CACCUG- -5'
19738 3' -56.5 NC_004687.1 + 64522 0.66 0.864733
Target:  5'- cUACGUCCGggCgGCGcugACCuGGUGGAa -3'
miRNA:   3'- uAUGCAGGUa-GgCGU---UGGcCCACCUg -5'
19738 3' -56.5 NC_004687.1 + 90247 0.66 0.863979
Target:  5'- gGUGCGggugCCcggauugAUCCGagccuCCGGGUGGAUc -3'
miRNA:   3'- -UAUGCa---GG-------UAGGCguu--GGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 39724 0.66 0.863979
Target:  5'- -aGCGUCCggcggaGUCCGaCGAcaaccauCCGGGUGG-Ca -3'
miRNA:   3'- uaUGCAGG------UAGGC-GUU-------GGCCCACCuG- -5'
19738 3' -56.5 NC_004687.1 + 40838 0.67 0.857101
Target:  5'- -gAUGUCgCcgCCGCugguggccgguGCCgGGGUGGGCg -3'
miRNA:   3'- uaUGCAG-GuaGGCGu----------UGG-CCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 74845 0.67 0.849266
Target:  5'- -gACGUCaGUCgGcCAACCGGGcgauccUGGGCu -3'
miRNA:   3'- uaUGCAGgUAGgC-GUUGGCCC------ACCUG- -5'
19738 3' -56.5 NC_004687.1 + 14168 0.67 0.849266
Target:  5'- uUGgGUUCAUCCGCAuguagauCCGGGUcuuaGGCa -3'
miRNA:   3'- uAUgCAGGUAGGCGUu------GGCCCAc---CUG- -5'
19738 3' -56.5 NC_004687.1 + 13309 0.67 0.849266
Target:  5'- uUGCGcUCgGUCUGCA---GGGUGGGCa -3'
miRNA:   3'- uAUGC-AGgUAGGCGUuggCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 21274 0.67 0.825456
Target:  5'- -gGCGUaCCAcUCGCGACguucggcaccggugaGGGUGGACa -3'
miRNA:   3'- uaUGCA-GGUaGGCGUUGg--------------CCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 22670 0.67 0.824607
Target:  5'- -gGCGUUCucgGUCCGCGaggaccucgaacACCGGGUcGGCg -3'
miRNA:   3'- uaUGCAGG---UAGGCGU------------UGGCCCAcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.