miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 3' -56.5 NC_004687.1 + 149085 1.07 0.003324
Target:  5'- aAUACGUCCAUCCGCAACCGGGUGGACu -3'
miRNA:   3'- -UAUGCAGGUAGGCGUUGGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 144261 0.67 0.824607
Target:  5'- -cACG-CCGUCCuCGACCGGGUaGAa -3'
miRNA:   3'- uaUGCaGGUAGGcGUUGGCCCAcCUg -5'
19738 3' -56.5 NC_004687.1 + 141518 0.69 0.761339
Target:  5'- -aACcaCCAUCgGC-ACCGGGUGGGa -3'
miRNA:   3'- uaUGcaGGUAGgCGuUGGCCCACCUg -5'
19738 3' -56.5 NC_004687.1 + 139958 0.68 0.79296
Target:  5'- -aGCGUCU-UCgGCAACUGGGUgccgcuggucgcgccGGACg -3'
miRNA:   3'- uaUGCAGGuAGgCGUUGGCCCA---------------CCUG- -5'
19738 3' -56.5 NC_004687.1 + 138822 0.69 0.712539
Target:  5'- cAUGCGUCCGccggugacgaUCCGCuggcGCCGGa-GGACa -3'
miRNA:   3'- -UAUGCAGGU----------AGGCGu---UGGCCcaCCUG- -5'
19738 3' -56.5 NC_004687.1 + 135865 0.66 0.879362
Target:  5'- gGUGCGUCUgguggagcaGUCCG-AGCUGGGcccGGGCg -3'
miRNA:   3'- -UAUGCAGG---------UAGGCgUUGGCCCa--CCUG- -5'
19738 3' -56.5 NC_004687.1 + 135307 0.7 0.67221
Target:  5'- -gAUGUCgGUCaC-CAGCCGGGUGGcACg -3'
miRNA:   3'- uaUGCAGgUAG-GcGUUGGCCCACC-UG- -5'
19738 3' -56.5 NC_004687.1 + 134358 0.69 0.742098
Target:  5'- --uCGUCCAgagccuuggCCGCGcucacgaccGCCGGGcgGGACa -3'
miRNA:   3'- uauGCAGGUa--------GGCGU---------UGGCCCa-CCUG- -5'
19738 3' -56.5 NC_004687.1 + 124299 0.66 0.893112
Target:  5'- cUugG-CCAUCCcaaacGUGAUCGGGUGGuCg -3'
miRNA:   3'- uAugCaGGUAGG-----CGUUGGCCCACCuG- -5'
19738 3' -56.5 NC_004687.1 + 123958 0.77 0.306892
Target:  5'- -cGCGgUCAUCCGCGACCaGGUGGAg -3'
miRNA:   3'- uaUGCaGGUAGGCGUUGGcCCACCUg -5'
19738 3' -56.5 NC_004687.1 + 123142 0.68 0.807281
Target:  5'- ---aGUCgGgaccCCGCAACUGGGacUGGACg -3'
miRNA:   3'- uaugCAGgUa---GGCGUUGGCCC--ACCUG- -5'
19738 3' -56.5 NC_004687.1 + 121094 0.8 0.197741
Target:  5'- aGUAUGUCgaccggacccaccaCGUCCGgGGCCGGGUGGACu -3'
miRNA:   3'- -UAUGCAG--------------GUAGGCgUUGGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 120008 0.68 0.780123
Target:  5'- -gGCGUCUcgCCGUGGCCGGGg---- -3'
miRNA:   3'- uaUGCAGGuaGGCGUUGGCCCaccug -5'
19738 3' -56.5 NC_004687.1 + 117965 0.66 0.872155
Target:  5'- -gACGUCaaccaGUCCGguGCCGGGUucACc -3'
miRNA:   3'- uaUGCAGg----UAGGCguUGGCCCAccUG- -5'
19738 3' -56.5 NC_004687.1 + 108446 0.69 0.755612
Target:  5'- ---gGUCCucaggcuugCCGCcuaccgugcaguccuGGCCGGGUGGGCa -3'
miRNA:   3'- uaugCAGGua-------GGCG---------------UUGGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 106608 0.66 0.879362
Target:  5'- aGUACGUCUAccUCgggCGCAACCGGcacaaGUGGGu -3'
miRNA:   3'- -UAUGCAGGU--AG---GCGUUGGCC-----CACCUg -5'
19738 3' -56.5 NC_004687.1 + 105420 0.72 0.540168
Target:  5'- -aACGagCGUCCGCuucuGGCCGGGauUGGACg -3'
miRNA:   3'- uaUGCagGUAGGCG----UUGGCCC--ACCUG- -5'
19738 3' -56.5 NC_004687.1 + 99349 0.68 0.807281
Target:  5'- -gACGUCgGgcucgCCGCcgccccaguCCGGGUGGAUc -3'
miRNA:   3'- uaUGCAGgUa----GGCGuu-------GGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 93067 0.72 0.540168
Target:  5'- --uCGaUCCGUCCGaCAuCUGGGUGGGCc -3'
miRNA:   3'- uauGC-AGGUAGGC-GUuGGCCCACCUG- -5'
19738 3' -56.5 NC_004687.1 + 90247 0.66 0.863979
Target:  5'- gGUGCGggugCCcggauugAUCCGagccuCCGGGUGGAUc -3'
miRNA:   3'- -UAUGCa---GG-------UAGGCguu--GGCCCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.