miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 5' -61.4 NC_004687.1 + 155235 0.7 0.449009
Target:  5'- aGCGCUCgaaGCCGaucacGCaGCGGGGCGGCu- -3'
miRNA:   3'- -CGCGAG---UGGCa----CGgCGCUCCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 154672 0.7 0.449009
Target:  5'- aGCGC-CACUccgGCUGCucGGCAGCGUg -3'
miRNA:   3'- -CGCGaGUGGca-CGGCGcuCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 149511 0.66 0.658867
Target:  5'- aGUGUUCGacaGUGCCGCccAGGUGGCGa -3'
miRNA:   3'- -CGCGAGUgg-CACGGCGc-UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 149121 1.08 0.00118
Target:  5'- gGCGCUCACCGUGCCGCGAGGCAGCGUu -3'
miRNA:   3'- -CGCGAGUGGCACGGCGCUCCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 148814 0.67 0.638165
Target:  5'- cGCGCuacuUCGCCGaccagGCCGCGcgugaggagcgcaAGGCcgAGCGg -3'
miRNA:   3'- -CGCG----AGUGGCa----CGGCGC-------------UCCG--UCGCa -5'
19738 5' -61.4 NC_004687.1 + 148153 0.66 0.668698
Target:  5'- uUGCgCACCGUGgccuggaacuccUCGCuGGGCAGCGa -3'
miRNA:   3'- cGCGaGUGGCAC------------GGCGcUCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 145255 0.66 0.695084
Target:  5'- cGCGCUCAUgGUGCUGCagaagauccccgaaGAGGUccucaaggccuGGCa- -3'
miRNA:   3'- -CGCGAGUGgCACGGCG--------------CUCCG-----------UCGca -5'
19738 5' -61.4 NC_004687.1 + 140370 0.66 0.678503
Target:  5'- cGUGgUCGCgCGUGaCCGacauGGCAGCGg -3'
miRNA:   3'- -CGCgAGUG-GCAC-GGCgcu-CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 138546 0.78 0.144312
Target:  5'- -aGCUCGCCGuUGUCGCGAuagugcaccGGCAGCGg -3'
miRNA:   3'- cgCGAGUGGC-ACGGCGCU---------CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 138485 0.69 0.484984
Target:  5'- gGCGCUCGCacaGCCGCGcGGaCAGCc- -3'
miRNA:   3'- -CGCGAGUGgcaCGGCGCuCC-GUCGca -5'
19738 5' -61.4 NC_004687.1 + 135556 0.66 0.688271
Target:  5'- cCGCUgGCCcugGCCGC-AGuGCGGCGg -3'
miRNA:   3'- cGCGAgUGGca-CGGCGcUC-CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 135316 0.66 0.678503
Target:  5'- cGCGCuggaucUCAuCCGUGCCGaGcuGCAGCGc -3'
miRNA:   3'- -CGCG------AGU-GGCACGGCgCucCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 134414 0.71 0.397951
Target:  5'- cUGCUCGCCcaGCCGgGugcGGGCGGCGa -3'
miRNA:   3'- cGCGAGUGGcaCGGCgC---UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 130464 0.68 0.541341
Target:  5'- uGCGCUgGCCGcgcUGCCGC-AGGUcgcacgcacGGCGa -3'
miRNA:   3'- -CGCGAgUGGC---ACGGCGcUCCG---------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 130021 0.66 0.658867
Target:  5'- gGCGCg-ACCGaUGUCGUGAGacaacugcaGCAGCGa -3'
miRNA:   3'- -CGCGagUGGC-ACGGCGCUC---------CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 124525 0.68 0.56063
Target:  5'- gGUGCacaACCGUGCCGaCGAGGacgaCGGCa- -3'
miRNA:   3'- -CGCGag-UGGCACGGC-GCUCC----GUCGca -5'
19738 5' -61.4 NC_004687.1 + 119884 0.66 0.688271
Target:  5'- -aGCUCGCCGccccggGCCGCucGGCuuGGUGg -3'
miRNA:   3'- cgCGAGUGGCa-----CGGCGcuCCG--UCGCa -5'
19738 5' -61.4 NC_004687.1 + 117167 0.68 0.580103
Target:  5'- gGCGC-CACCgGUGCCGCcgGAGauCAGCGc -3'
miRNA:   3'- -CGCGaGUGG-CACGGCG--CUCc-GUCGCa -5'
19738 5' -61.4 NC_004687.1 + 114961 0.77 0.159286
Target:  5'- cUGCUCGCCGUGCCccGCGAggacgcGGCAGCa- -3'
miRNA:   3'- cGCGAGUGGCACGG--CGCU------CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 113241 0.71 0.414557
Target:  5'- gGUGCUCuCgGUGUCGCccGGCAGCGc -3'
miRNA:   3'- -CGCGAGuGgCACGGCGcuCCGUCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.