miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19740 5' -51.5 NC_004687.1 + 150751 0.69 0.90829
Target:  5'- -cCUUGCGCGCGgAucGCUCGGCGc- -3'
miRNA:   3'- auGAACGCGUGCgUcaUGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 149914 0.66 0.977994
Target:  5'- ---aUGCGCAgCGCGGc-CUCGGCAGc -3'
miRNA:   3'- augaACGCGU-GCGUCauGAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 149603 0.68 0.936559
Target:  5'- gACUUGCGCacucgcgugcgACGCAuGUgcgacgaGCUCGACAu- -3'
miRNA:   3'- aUGAACGCG-----------UGCGU-CA-------UGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 148498 0.66 0.984498
Target:  5'- aGCUUGUcCugGCAGgcCUUGACGc- -3'
miRNA:   3'- aUGAACGcGugCGUCauGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 147603 1.05 0.011199
Target:  5'- gUACUUGCGCACGCAGUACUCGACAAUg -3'
miRNA:   3'- -AUGAACGCGUGCGUCAUGAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 147086 0.69 0.931842
Target:  5'- gGCUcGCGCugGCGGgug-CGACGAa -3'
miRNA:   3'- aUGAaCGCGugCGUCaugaGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 143523 0.68 0.93707
Target:  5'- aGCUgaugGCcuuCGCGCAGUGCUCGguGCAGa -3'
miRNA:   3'- aUGAa---CGc--GUGCGUCAUGAGC--UGUUa -5'
19740 5' -51.5 NC_004687.1 + 142824 0.66 0.986303
Target:  5'- cGCgaGCGCAgCGCGGUG-UUGGCGAa -3'
miRNA:   3'- aUGaaCGCGU-GCGUCAUgAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 139028 0.7 0.880582
Target:  5'- -cCUUGCGCugGCGGUcggcCUCGuCGAUc -3'
miRNA:   3'- auGAACGCGugCGUCAu---GAGCuGUUA- -5'
19740 5' -51.5 NC_004687.1 + 136357 0.67 0.972661
Target:  5'- aGCUcGCGCcCGguGUGUUCGGCAGc -3'
miRNA:   3'- aUGAaCGCGuGCguCAUGAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 132038 0.66 0.977994
Target:  5'- ----cGCaGCACGguGUGCUCGGgAAc -3'
miRNA:   3'- augaaCG-CGUGCguCAUGAGCUgUUa -5'
19740 5' -51.5 NC_004687.1 + 127364 0.68 0.93707
Target:  5'- aGCUUGCGCugaGCGGccucggcCUCGACGAc -3'
miRNA:   3'- aUGAACGCGug-CGUCau-----GAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 118224 0.71 0.831833
Target:  5'- aGCUggccagGCGCugGCGGUuggcCUCGGCGGc -3'
miRNA:   3'- aUGAa-----CGCGugCGUCAu---GAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 117222 0.67 0.969669
Target:  5'- aGCUUGCGCucgAUGCGGUcguAgUCGGCGu- -3'
miRNA:   3'- aUGAACGCG---UGCGUCA---UgAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 111614 0.69 0.926351
Target:  5'- gUGCU--CGCGCGCGGUG-UCGACAGc -3'
miRNA:   3'- -AUGAacGCGUGCGUCAUgAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 104815 0.69 0.931842
Target:  5'- aGCUUGCGUccgcccauGCGCugcuuGgcCUCGACAAUg -3'
miRNA:   3'- aUGAACGCG--------UGCGu----CauGAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 103247 0.66 0.984498
Target:  5'- gGCUUGCgGCccggacgauuaGgGCGGUGCUCGucGCAGUa -3'
miRNA:   3'- aUGAACG-CG-----------UgCGUCAUGAGC--UGUUA- -5'
19740 5' -51.5 NC_004687.1 + 102919 0.7 0.894944
Target:  5'- ----cGCGCGCGCGGguccaccgGCUCGACc-- -3'
miRNA:   3'- augaaCGCGUGCGUCa-------UGAGCUGuua -5'
19740 5' -51.5 NC_004687.1 + 97618 0.66 0.977748
Target:  5'- cGCUUGUGUucACGCAgguggccGUACUUGGCGu- -3'
miRNA:   3'- aUGAACGCG--UGCGU-------CAUGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 92121 0.66 0.984498
Target:  5'- gUGgUUGCGguCGcCGGUGCcCGACGAc -3'
miRNA:   3'- -AUgAACGCguGC-GUCAUGaGCUGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.