miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 3' -66.6 NC_004687.1 + 32510 0.66 0.417916
Target:  5'- uGGCCugacGGCUCgGUggacCCCCGGUCCUAc -3'
miRNA:   3'- cCCGG----UCGAGgCGu---GGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 133171 0.66 0.459053
Target:  5'- uGGCCAGCaugggcuUCCGCAaucucgaauggUUCUGGCgCCGGg -3'
miRNA:   3'- cCCGGUCG-------AGGCGU-----------GGGGCCGgGGUC- -5'
19742 3' -66.6 NC_004687.1 + 40803 0.66 0.415471
Target:  5'- cGGUCGGCggUCGCcgguacugguacuaGCCaCCGGCCCgGGa -3'
miRNA:   3'- cCCGGUCGa-GGCG--------------UGG-GGCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 114364 0.66 0.437789
Target:  5'- -uGCCAGCuucgUCUGCGCCCCcagccugcacgccgaGGaCCCCGa -3'
miRNA:   3'- ccCGGUCG----AGGCGUGGGG---------------CC-GGGGUc -5'
19742 3' -66.6 NC_004687.1 + 79631 0.66 0.417101
Target:  5'- cGGcGCCgacaucaugcgcaAGUUCgGCG-CCCGGCCCCuGg -3'
miRNA:   3'- -CC-CGG-------------UCGAGgCGUgGGGCCGGGGuC- -5'
19742 3' -66.6 NC_004687.1 + 52689 0.66 0.417916
Target:  5'- cGGGCCgcaAGC-CCGCACCUCGGaucacugcgaCCUg- -3'
miRNA:   3'- -CCCGG---UCGaGGCGUGGGGCCg---------GGGuc -5'
19742 3' -66.6 NC_004687.1 + 74030 0.66 0.417916
Target:  5'- uGGGCUacGGCaacUCCGCG-CCgGGCUCCAu -3'
miRNA:   3'- -CCCGG--UCG---AGGCGUgGGgCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 144565 0.66 0.417916
Target:  5'- aGGGCaucGCUCaGCACCCCagucugGGCCuggCCAGc -3'
miRNA:   3'- -CCCGgu-CGAGgCGUGGGG------CCGG---GGUC- -5'
19742 3' -66.6 NC_004687.1 + 135540 0.66 0.417916
Target:  5'- gGGcGCCgauGGCcuaCCGCugGCCCUGGCCgCAGu -3'
miRNA:   3'- -CC-CGG---UCGa--GGCG--UGGGGCCGGgGUC- -5'
19742 3' -66.6 NC_004687.1 + 112922 0.66 0.451334
Target:  5'- cGGGCCGGUUCauggaGCGCaagaUGGUCCgGGg -3'
miRNA:   3'- -CCCGGUCGAGg----CGUGgg--GCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 75298 0.66 0.442841
Target:  5'- aGGGCCuGGCaaagCCGUucACCaCCGGCCUg-- -3'
miRNA:   3'- -CCCGG-UCGa---GGCG--UGG-GGCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 74944 0.66 0.434439
Target:  5'- uGGCCAGC-CCGCagcucaugGCCaugaCGGCCaaCCGGc -3'
miRNA:   3'- cCCGGUCGaGGCG--------UGGg---GCCGG--GGUC- -5'
19742 3' -66.6 NC_004687.1 + 68525 0.66 0.421191
Target:  5'- cGGGCCggggcaagaucuGGCgcgaccagaaguggCgGCACCCgGGCCUCAa -3'
miRNA:   3'- -CCCGG------------UCGa-------------GgCGUGGGgCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 82738 0.66 0.442841
Target:  5'- uGGCCAuCaCCGCG-CCCGGCUUCAGc -3'
miRNA:   3'- cCCGGUcGaGGCGUgGGGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 3661 0.66 0.459915
Target:  5'- uGGCCAuggCCGCGaucgUCCUGGCCaCCGGg -3'
miRNA:   3'- cCCGGUcgaGGCGU----GGGGCCGG-GGUC- -5'
19742 3' -66.6 NC_004687.1 + 63233 0.66 0.459915
Target:  5'- aGGGCCAGgUggcaucgacgCCGCAgCCCgaCGGCaCCUGGa -3'
miRNA:   3'- -CCCGGUCgA----------GGCGU-GGG--GCCG-GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 17243 0.66 0.442841
Target:  5'- cGGUCAGCauUCCGgGCaCCUGGgCUCGGa -3'
miRNA:   3'- cCCGGUCG--AGGCgUG-GGGCCgGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 64880 0.66 0.451334
Target:  5'- cGGCgGGCgacaucCCGCGCgUgGGCCUCGGc -3'
miRNA:   3'- cCCGgUCGa-----GGCGUGgGgCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 103254 0.66 0.451334
Target:  5'- cGGcGaCCAGgUCCGCuACgCCCGcGCCCUg- -3'
miRNA:   3'- -CC-C-GGUCgAGGCG-UG-GGGC-CGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 72214 0.66 0.42613
Target:  5'- cGGGCCuGCUCCGgAacuguucuCCCCGaugauGUUCCAGc -3'
miRNA:   3'- -CCCGGuCGAGGCgU--------GGGGC-----CGGGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.