miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 3' -66.6 NC_004687.1 + 592 0.67 0.4098
Target:  5'- cGGCaGGCUCaGCACCagGGCCaCCAGc -3'
miRNA:   3'- cCCGgUCGAGgCGUGGggCCGG-GGUC- -5'
19742 3' -66.6 NC_004687.1 + 1052 0.68 0.363226
Target:  5'- aGGCCGGUUaucaCGCGCugcgCCUGGCCauCCAGg -3'
miRNA:   3'- cCCGGUCGAg---GCGUG----GGGCCGG--GGUC- -5'
19742 3' -66.6 NC_004687.1 + 2582 0.66 0.434439
Target:  5'- cGGUCuuGGCgaCCGCACCCCcggaGCCuCCGGg -3'
miRNA:   3'- cCCGG--UCGa-GGCGUGGGGc---CGG-GGUC- -5'
19742 3' -66.6 NC_004687.1 + 3661 0.66 0.459915
Target:  5'- uGGCCAuggCCGCGaucgUCCUGGCCaCCGGg -3'
miRNA:   3'- cCCGGUcgaGGCGU----GGGGCCGG-GGUC- -5'
19742 3' -66.6 NC_004687.1 + 4475 0.66 0.451334
Target:  5'- uGGCCAGgauCUCCGgcuCGCCauaCCGGCCCUc- -3'
miRNA:   3'- cCCGGUC---GAGGC---GUGG---GGCCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 6106 0.67 0.38605
Target:  5'- cGGGCCAGgaggccucugcCUCCGCguugGCCUgGGCUguggCCAGu -3'
miRNA:   3'- -CCCGGUC-----------GAGGCG----UGGGgCCGG----GGUC- -5'
19742 3' -66.6 NC_004687.1 + 9265 0.68 0.341355
Target:  5'- uGGCCucgGGCUaCCGCACCaucugcgaCGGCCCg-- -3'
miRNA:   3'- cCCGG---UCGA-GGCGUGGg-------GCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 9528 0.76 0.095483
Target:  5'- cGGCCAGCg--GCGCCCCGGCgUCGGg -3'
miRNA:   3'- cCCGGUCGaggCGUGGGGCCGgGGUC- -5'
19742 3' -66.6 NC_004687.1 + 10019 0.66 0.441997
Target:  5'- uGGCCAGCUugCCGUcCUgguuguaCCGGCCCUg- -3'
miRNA:   3'- cCCGGUCGA--GGCGuGG-------GGCCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 14318 0.73 0.170516
Target:  5'- aGGGCUgcguGGCUCCacGCACCCaguaGGCCUCGu -3'
miRNA:   3'- -CCCGG----UCGAGG--CGUGGGg---CCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 14398 0.68 0.363226
Target:  5'- cGGGUCAGUUCC-CACCC-GGUgCCGa -3'
miRNA:   3'- -CCCGGUCGAGGcGUGGGgCCGgGGUc -5'
19742 3' -66.6 NC_004687.1 + 15491 0.67 0.38605
Target:  5'- uGGaCCAGCaagcaCCGCagcucgACCCCGGUcgCCCGGg -3'
miRNA:   3'- cCC-GGUCGa----GGCG------UGGGGCCG--GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 16925 0.69 0.294096
Target:  5'- -uGCCGgacGCUCCgGCACCCgGGCCuCCGc -3'
miRNA:   3'- ccCGGU---CGAGG-CGUGGGgCCGG-GGUc -5'
19742 3' -66.6 NC_004687.1 + 17243 0.66 0.442841
Target:  5'- cGGUCAGCauUCCGgGCaCCUGGgCUCGGa -3'
miRNA:   3'- cCCGGUCG--AGGCgUG-GGGCCgGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 17665 0.69 0.307058
Target:  5'- cGGUCAGCgagaGCAUCgCGGCCUCGGa -3'
miRNA:   3'- cCCGGUCGagg-CGUGGgGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 20186 0.68 0.355829
Target:  5'- aGGCCuGCUCa-CGgCCCGGCCCaGGa -3'
miRNA:   3'- cCCGGuCGAGgcGUgGGGCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 20261 0.66 0.454756
Target:  5'- uGGCCAacccGCUcuccgucgugauguaCCaGCACCUCGucGCCCCAGa -3'
miRNA:   3'- cCCGGU----CGA---------------GG-CGUGGGGC--CGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 20382 0.68 0.334279
Target:  5'- aGGGCCAGCg--GUagGCCaUCGGCgCCCAGa -3'
miRNA:   3'- -CCCGGUCGaggCG--UGG-GGCCG-GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 20511 0.68 0.348538
Target:  5'- cGGCCAGggCCuGCAUcauggaCCCGGCCUCGa -3'
miRNA:   3'- cCCGGUCgaGG-CGUG------GGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 20582 0.68 0.363226
Target:  5'- uGGGCCAGCUgaggacggcgCUGCAgCUCGGCacggaugagaUCCAGc -3'
miRNA:   3'- -CCCGGUCGA----------GGCGUgGGGCCG----------GGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.