miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 3' -66.6 NC_004687.1 + 152064 0.68 0.355829
Target:  5'- aGGGcCCAGC----CACCCCGGCCaCCGa -3'
miRNA:   3'- -CCC-GGUCGaggcGUGGGGCCGG-GGUc -5'
19742 3' -66.6 NC_004687.1 + 74504 0.69 0.275459
Target:  5'- aGGCCcaGGC-CCGCAUgCUGGCCCUg- -3'
miRNA:   3'- cCCGG--UCGaGGCGUGgGGCCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 131892 0.69 0.294096
Target:  5'- aGGGgCGGacaccuuucgaUCUGUACCCCGGgCCCAa -3'
miRNA:   3'- -CCCgGUCg----------AGGCGUGGGGCCgGGGUc -5'
19742 3' -66.6 NC_004687.1 + 86491 0.68 0.327312
Target:  5'- cGGCaAGUUCgGCAUCCauccggacgCGGCCCCGGc -3'
miRNA:   3'- cCCGgUCGAGgCGUGGG---------GCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 77594 0.68 0.332178
Target:  5'- cGGGCCAGCUgcaCCcucaagcgccugcuGCACaCCUGGUgggaCCCGGg -3'
miRNA:   3'- -CCCGGUCGA---GG--------------CGUG-GGGCCG----GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 149762 0.68 0.337097
Target:  5'- cGGCCAGCUCUucgaugcggucugguGCGCCggaCUGGCcacagCCCAGg -3'
miRNA:   3'- cCCGGUCGAGG---------------CGUGG---GGCCG-----GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 9265 0.68 0.341355
Target:  5'- uGGCCucgGGCUaCCGCACCaucugcgaCGGCCCg-- -3'
miRNA:   3'- cCCGG---UCGA-GGCGUGGg-------GCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 94764 0.68 0.348538
Target:  5'- uGGGaCCAGCaUCC-CACCCaaGCCCgCAGc -3'
miRNA:   3'- -CCC-GGUCG-AGGcGUGGGgcCGGG-GUC- -5'
19742 3' -66.6 NC_004687.1 + 135408 0.68 0.348538
Target:  5'- aGGCCGGgUCCaugauGCagGCCCUGGCCgaCCGGa -3'
miRNA:   3'- cCCGGUCgAGG-----CG--UGGGGCCGG--GGUC- -5'
19742 3' -66.6 NC_004687.1 + 64229 0.7 0.263567
Target:  5'- cGGaCCAGCagUGUcgACCUCGGCCCCAc -3'
miRNA:   3'- cCC-GGUCGagGCG--UGGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 86085 0.7 0.263567
Target:  5'- aGGaCgGGCUCaacgugaGCGCCCCGGUgCCGGu -3'
miRNA:   3'- cCC-GgUCGAGg------CGUGGGGCCGgGGUC- -5'
19742 3' -66.6 NC_004687.1 + 91938 0.71 0.222156
Target:  5'- uGGGCCGGUUCgGCguccacuucugauucACCCCggcggGGCCCCc- -3'
miRNA:   3'- -CCCGGUCGAGgCG---------------UGGGG-----CCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 88994 0.75 0.11063
Target:  5'- cGGGCCaacAGCUgCGCAUCCCGGCCa--- -3'
miRNA:   3'- -CCCGG---UCGAgGCGUGGGGCCGGgguc -5'
19742 3' -66.6 NC_004687.1 + 80444 0.74 0.144379
Target:  5'- cGGCgGGC-CCagGCGCCCCGGCCuCCAc -3'
miRNA:   3'- cCCGgUCGaGG--CGUGGGGCCGG-GGUc -5'
19742 3' -66.6 NC_004687.1 + 45262 0.73 0.151449
Target:  5'- cGGG-CAGCUCgGcCACUCCGGCUCCGu -3'
miRNA:   3'- -CCCgGUCGAGgC-GUGGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 126543 0.73 0.166538
Target:  5'- -cGCCAGCUCgGCcaggagcacaagAUCCCGGCCCgGGu -3'
miRNA:   3'- ccCGGUCGAGgCG------------UGGGGCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 37716 0.72 0.174578
Target:  5'- uGGCCAGCUaCCGCaagcagggcaACUUCGGCUCCAa -3'
miRNA:   3'- cCCGGUCGA-GGCG----------UGGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 44768 0.72 0.195752
Target:  5'- cGGGCCAGC-CgGgcaacaaCACCCCGGCUgcgCCGGg -3'
miRNA:   3'- -CCCGGUCGaGgC-------GUGGGGCCGG---GGUC- -5'
19742 3' -66.6 NC_004687.1 + 20862 0.71 0.210279
Target:  5'- uGGCCGcGCgCCGgGCCCUGGCCCg-- -3'
miRNA:   3'- cCCGGU-CGaGGCgUGGGGCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 115064 0.71 0.220138
Target:  5'- aGGCCGGa-CCGCccACCCCGGCaCCGGc -3'
miRNA:   3'- cCCGGUCgaGGCG--UGGGGCCGgGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.