miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 3' -66.6 NC_004687.1 + 144999 1.09 0.000326
Target:  5'- aGGGCCAGCUCCGCACCCCGGCCCCAGa -3'
miRNA:   3'- -CCCGGUCGAGGCGUGGGGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 9528 0.76 0.095483
Target:  5'- cGGCCAGCg--GCGCCCCGGCgUCGGg -3'
miRNA:   3'- cCCGGUCGaggCGUGGGGCCGgGGUC- -5'
19742 3' -66.6 NC_004687.1 + 129581 0.76 0.100054
Target:  5'- cGGCguGCggucUCCGaaaaagauauggaCACCCCGGCCCCGGg -3'
miRNA:   3'- cCCGguCG----AGGC-------------GUGGGGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 88994 0.75 0.11063
Target:  5'- cGGGCCaacAGCUgCGCAUCCCGGCCa--- -3'
miRNA:   3'- -CCCGG---UCGAgGCGUGGGGCCGGgguc -5'
19742 3' -66.6 NC_004687.1 + 63773 0.74 0.13082
Target:  5'- uGGCCuugAGCUUgGCGCCCuggaccuuggucgCGGCCCCGGa -3'
miRNA:   3'- cCCGG---UCGAGgCGUGGG-------------GCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 137749 0.74 0.131136
Target:  5'- gGGGCgUAGCUCaGCgaGCCCCGGCCCaCAc -3'
miRNA:   3'- -CCCG-GUCGAGgCG--UGGGGCCGGG-GUc -5'
19742 3' -66.6 NC_004687.1 + 138616 0.74 0.13961
Target:  5'- uGGCCAGCUCguugagagcgacaGCGgCCCGGUUCCAGg -3'
miRNA:   3'- cCCGGUCGAGg------------CGUgGGGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 77898 0.74 0.140958
Target:  5'- cGGCCAGgUCacgGUugUCCGGCCCCAu -3'
miRNA:   3'- cCCGGUCgAGg--CGugGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 80444 0.74 0.144379
Target:  5'- cGGCgGGC-CCagGCGCCCCGGCCuCCAc -3'
miRNA:   3'- cCCGgUCGaGG--CGUGGGGCCGG-GGUc -5'
19742 3' -66.6 NC_004687.1 + 45262 0.73 0.151449
Target:  5'- cGGG-CAGCUCgGcCACUCCGGCUCCGu -3'
miRNA:   3'- -CCCgGUCGAGgC-GUGGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 39024 0.73 0.156583
Target:  5'- gGGGCCAGCUCgCcgccgaucuccuggaGCACCUCG-CCCCAa -3'
miRNA:   3'- -CCCGGUCGAG-G---------------CGUGGGGCcGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 126543 0.73 0.166538
Target:  5'- -cGCCAGCUCgGCcaggagcacaagAUCCCGGCCCgGGu -3'
miRNA:   3'- ccCGGUCGAGgCG------------UGGGGCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 14318 0.73 0.170516
Target:  5'- aGGGCUgcguGGCUCCacGCACCCaguaGGCCUCGu -3'
miRNA:   3'- -CCCGG----UCGAGG--CGUGGGg---CCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 37716 0.72 0.174578
Target:  5'- uGGCCAGCUaCCGCaagcagggcaACUUCGGCUCCAa -3'
miRNA:   3'- cCCGGUCGA-GGCG----------UGGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 81420 0.72 0.182963
Target:  5'- aGGGCCAGCaUgCGgGCCUgGGCCUCGu -3'
miRNA:   3'- -CCCGGUCG-AgGCgUGGGgCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 112752 0.72 0.195298
Target:  5'- cGGCCcccgccccacccGCUCCGCAgCaCCGGCUCCGGc -3'
miRNA:   3'- cCCGGu-----------CGAGGCGUgG-GGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 44768 0.72 0.195752
Target:  5'- cGGGCCAGC-CgGgcaacaaCACCCCGGCUgcgCCGGg -3'
miRNA:   3'- -CCCGGUCGaGgC-------GUGGGGCCGG---GGUC- -5'
19742 3' -66.6 NC_004687.1 + 30654 0.72 0.196206
Target:  5'- cGGGUC-GUUgaGCACCCCgauccGGCCCCAGu -3'
miRNA:   3'- -CCCGGuCGAggCGUGGGG-----CCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 91022 0.72 0.200804
Target:  5'- uGGGCCcGCgCCGCGCCgaGGCCCa-- -3'
miRNA:   3'- -CCCGGuCGaGGCGUGGggCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 144892 0.71 0.205494
Target:  5'- uGGCCuGgUCCGCAgCCCUGGCgCCGa -3'
miRNA:   3'- cCCGGuCgAGGCGU-GGGGCCGgGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.