Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19742 | 5' | -57.5 | NC_004687.1 | + | 71844 | 0.66 | 0.854883 |
Target: 5'- -uCUGCCGGGcugACAacCCGcGCGGCaUCCa -3' miRNA: 3'- acGACGGCCCa--UGU--GGUcUGUCG-AGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 9516 | 0.66 | 0.854883 |
Target: 5'- cGCUGUCGGcaGCgGCCAG-CGGCgccCCg -3' miRNA: 3'- aCGACGGCCcaUG-UGGUCuGUCGa--GG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 30361 | 0.66 | 0.86252 |
Target: 5'- aGgUG-CGGGUGCAggUAGGCuGCUCCg -3' miRNA: 3'- aCgACgGCCCAUGUg-GUCUGuCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 148649 | 0.66 | 0.857962 |
Target: 5'- cUGCUGCaCGccucgcuggaccgcuGGUACGCCAGccuCAGCa-- -3' miRNA: 3'- -ACGACG-GC---------------CCAUGUGGUCu--GUCGagg -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 59358 | 0.66 | 0.86252 |
Target: 5'- aGC-GCUGGGUggACGCUcacaaGGAgAGCUUCg -3' miRNA: 3'- aCGaCGGCCCA--UGUGG-----UCUgUCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 39554 | 0.66 | 0.86252 |
Target: 5'- cGCcggGCCGGGcaACGCCccGGCgAGCUUCu -3' miRNA: 3'- aCGa--CGGCCCa-UGUGGu-CUG-UCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 44728 | 0.66 | 0.86252 |
Target: 5'- gGCccGCauGGUGCGgCAGGCAGCgcgaCCa -3' miRNA: 3'- aCGa-CGgcCCAUGUgGUCUGUCGa---GG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 48018 | 0.66 | 0.86252 |
Target: 5'- -aCUGCuCGGGUgAUGCCgaGGugGGCUUCu -3' miRNA: 3'- acGACG-GCCCA-UGUGG--UCugUCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 106857 | 0.66 | 0.821566 |
Target: 5'- gUGCUGCCGGGaugACggucgcgACCuuccACAGC-CCg -3' miRNA: 3'- -ACGACGGCCCa--UG-------UGGuc--UGUCGaGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 26538 | 0.66 | 0.861765 |
Target: 5'- cGCgGUCGGGccgACGuucuucgUCGGuCAGCUCCg -3' miRNA: 3'- aCGaCGGCCCa--UGU-------GGUCuGUCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 104835 | 0.66 | 0.822414 |
Target: 5'- cGUUGCgGGaauuUACGCCggAGACGGCgUCCc -3' miRNA: 3'- aCGACGgCCc---AUGUGG--UCUGUCG-AGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 28608 | 0.66 | 0.847047 |
Target: 5'- aGC-GCaCGGccaACACCugguuuGACGGCUCCg -3' miRNA: 3'- aCGaCG-GCCca-UGUGGu-----CUGUCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 4194 | 0.66 | 0.839019 |
Target: 5'- cGgUGgCGGGccgaGCugCGGcACAGCUCUg -3' miRNA: 3'- aCgACgGCCCa---UGugGUC-UGUCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 36788 | 0.66 | 0.838206 |
Target: 5'- aGCUGCCGGaguucgacgaGUGgGCCauGGGCAGUgaucaugUCCc -3' miRNA: 3'- aCGACGGCC----------CAUgUGG--UCUGUCG-------AGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 117884 | 0.66 | 0.822414 |
Target: 5'- gGCUGCCuGGUgauccACACCgacaAGACcauccGGUUCCu -3' miRNA: 3'- aCGACGGcCCA-----UGUGG----UCUG-----UCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 88797 | 0.66 | 0.861765 |
Target: 5'- cGCUccaCCGGGUGCcagacaccacguuGCCGGugGuCUCCu -3' miRNA: 3'- aCGAc--GGCCCAUG-------------UGGUCugUcGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 9007 | 0.66 | 0.847047 |
Target: 5'- cGCUGgCGGcGgugACACUggGGGCagcacgGGCUCCg -3' miRNA: 3'- aCGACgGCC-Ca--UGUGG--UCUG------UCGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 79598 | 0.66 | 0.839019 |
Target: 5'- cGCgccCCGGGUcaagggcgaACGCCGGAC--CUCCg -3' miRNA: 3'- aCGac-GGCCCA---------UGUGGUCUGucGAGG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 45840 | 0.66 | 0.839019 |
Target: 5'- cGC-GCCGGacGUggcgcGCGCCGGACGGUcgagCCg -3' miRNA: 3'- aCGaCGGCC--CA-----UGUGGUCUGUCGa---GG- -5' |
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19742 | 5' | -57.5 | NC_004687.1 | + | 83810 | 0.66 | 0.822414 |
Target: 5'- aUGCgGCUGGGcaGCguGCCGGucuGCAGUUCCc -3' miRNA: 3'- -ACGaCGGCCCa-UG--UGGUC---UGUCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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