miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 5' -57.5 NC_004687.1 + 117979 0.69 0.700872
Target:  5'- cGgUGCCGGGUucacccuCACCGacGAgGGCaUCCg -3'
miRNA:   3'- aCgACGGCCCAu------GUGGU--CUgUCG-AGG- -5'
19742 5' -57.5 NC_004687.1 + 77401 0.7 0.620004
Target:  5'- gUGCcGCCGGGUGgagaACuCGGuCAGCUCg -3'
miRNA:   3'- -ACGaCGGCCCAUg---UG-GUCuGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 120405 0.7 0.630163
Target:  5'- aGCUGCUGGGgcaguggAUcgACCGGGCccuGGCUCa -3'
miRNA:   3'- aCGACGGCCCa------UG--UGGUCUG---UCGAGg -5'
19742 5' -57.5 NC_004687.1 + 51534 0.7 0.630163
Target:  5'- cGCUGCUGGaaGCugCAG-CGGuCUCCu -3'
miRNA:   3'- aCGACGGCCcaUGugGUCuGUC-GAGG- -5'
19742 5' -57.5 NC_004687.1 + 81930 0.7 0.640325
Target:  5'- cGCU-CCGGGcaacaACGCCGGACAGg-CCg -3'
miRNA:   3'- aCGAcGGCCCa----UGUGGUCUGUCgaGG- -5'
19742 5' -57.5 NC_004687.1 + 85828 0.7 0.65048
Target:  5'- cUGCucUGCCGGugGCACCcucGACGGCaUCCg -3'
miRNA:   3'- -ACG--ACGGCCcaUGUGGu--CUGUCG-AGG- -5'
19742 5' -57.5 NC_004687.1 + 10886 0.69 0.670738
Target:  5'- aGCUGUCuGGUGUACCcGGCAGCacgCCg -3'
miRNA:   3'- aCGACGGcCCAUGUGGuCUGUCGa--GG- -5'
19742 5' -57.5 NC_004687.1 + 19565 0.69 0.670738
Target:  5'- cGCUGCCGaacACACCGGGCgcgAGCUUg -3'
miRNA:   3'- aCGACGGCccaUGUGGUCUG---UCGAGg -5'
19742 5' -57.5 NC_004687.1 + 57178 0.69 0.680825
Target:  5'- cGC--CCGGcGgACACCGGACAGCguggCCa -3'
miRNA:   3'- aCGacGGCC-CaUGUGGUCUGUCGa---GG- -5'
19742 5' -57.5 NC_004687.1 + 81350 0.7 0.599719
Target:  5'- gGUUGCUGGGgcCACCGuGACAGggUCg -3'
miRNA:   3'- aCGACGGCCCauGUGGU-CUGUCgaGG- -5'
19742 5' -57.5 NC_004687.1 + 124001 0.71 0.589608
Target:  5'- cGCUGCCGGaucugccaGCAcCCGGACAGCa-- -3'
miRNA:   3'- aCGACGGCCca------UGU-GGUCUGUCGagg -5'
19742 5' -57.5 NC_004687.1 + 77887 0.71 0.589608
Target:  5'- cUGCUGCUGGGcgaugACACCucuGGCGGUgugggagCCc -3'
miRNA:   3'- -ACGACGGCCCa----UGUGGu--CUGUCGa------GG- -5'
19742 5' -57.5 NC_004687.1 + 54179 0.75 0.368068
Target:  5'- cGCUGCUGGGgcCACCcAGGCcgcuGCUCg -3'
miRNA:   3'- aCGACGGCCCauGUGG-UCUGu---CGAGg -5'
19742 5' -57.5 NC_004687.1 + 134808 0.75 0.37614
Target:  5'- cUGCUgGCCGGGcuuguCGCCGGGguGCUCa -3'
miRNA:   3'- -ACGA-CGGCCCau---GUGGUCUguCGAGg -5'
19742 5' -57.5 NC_004687.1 + 74721 0.74 0.424368
Target:  5'- cGCUGCCGGGUcCACCGaccuGcuggaagccaugaaGCGGCUCUc -3'
miRNA:   3'- aCGACGGCCCAuGUGGU----C--------------UGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 15464 0.73 0.448466
Target:  5'- gGCgagGCCGGGUACggcaagcgccuguggACCAGcaagcaccGCAGCUCg -3'
miRNA:   3'- aCGa--CGGCCCAUG---------------UGGUC--------UGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 2860 0.71 0.559486
Target:  5'- cUGCUG-CGGGUGCGCC-GAguGCgaCCa -3'
miRNA:   3'- -ACGACgGCCCAUGUGGuCUguCGa-GG- -5'
19742 5' -57.5 NC_004687.1 + 137798 0.71 0.559486
Target:  5'- gUGCUGgCGGcGUggccGCGCUcaACAGCUCCg -3'
miRNA:   3'- -ACGACgGCC-CA----UGUGGucUGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 39446 0.71 0.569485
Target:  5'- cGCUGCCGGuc-CGCCuccGGguGCUCCc -3'
miRNA:   3'- aCGACGGCCcauGUGGu--CUguCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 101809 0.71 0.583556
Target:  5'- cGCUGCCGGGUugaucgaggccacccGCaugGCCAGGuagugcggggccCGGCUCa -3'
miRNA:   3'- aCGACGGCCCA---------------UG---UGGUCU------------GUCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.