miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 5' -57.5 NC_004687.1 + 2860 0.71 0.559486
Target:  5'- cUGCUG-CGGGUGCGCC-GAguGCgaCCa -3'
miRNA:   3'- -ACGACgGCCCAUGUGGuCUguCGa-GG- -5'
19742 5' -57.5 NC_004687.1 + 4194 0.66 0.839019
Target:  5'- cGgUGgCGGGccgaGCugCGGcACAGCUCUg -3'
miRNA:   3'- aCgACgGCCCa---UGugGUC-UGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 6861 0.68 0.730492
Target:  5'- aGCgaccaGCCGGGgcUGCgGGGCGGUUCg -3'
miRNA:   3'- aCGa----CGGCCCauGUGgUCUGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 9007 0.66 0.847047
Target:  5'- cGCUGgCGGcGgugACACUggGGGCagcacgGGCUCCg -3'
miRNA:   3'- aCGACgGCC-Ca--UGUGG--UCUG------UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 9516 0.66 0.854883
Target:  5'- cGCUGUCGGcaGCgGCCAG-CGGCgccCCg -3'
miRNA:   3'- aCGACGGCCcaUG-UGGUCuGUCGa--GG- -5'
19742 5' -57.5 NC_004687.1 + 9817 0.68 0.749834
Target:  5'- cGCcGCCGGGUAgccCACCGGcugcCAGCgguagagaUCCu -3'
miRNA:   3'- aCGaCGGCCCAU---GUGGUCu---GUCG--------AGG- -5'
19742 5' -57.5 NC_004687.1 + 9936 0.72 0.539641
Target:  5'- gGUUGuCCGGGccUGCCGGGC-GCUCCa -3'
miRNA:   3'- aCGAC-GGCCCauGUGGUCUGuCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 10767 0.67 0.805128
Target:  5'- cGCUGUCGuGGUACuggauggccaGCCGgucGACgAGCUCUu -3'
miRNA:   3'- aCGACGGC-CCAUG----------UGGU---CUG-UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 10886 0.69 0.670738
Target:  5'- aGCUGUCuGGUGUACCcGGCAGCacgCCg -3'
miRNA:   3'- aCGACGGcCCAUGUGGuCUGUCGa--GG- -5'
19742 5' -57.5 NC_004687.1 + 12734 0.67 0.813852
Target:  5'- cGCcaacgGCUGGGUccGCACCgacgAGugGGaCUCCc -3'
miRNA:   3'- aCGa----CGGCCCA--UGUGG----UCugUC-GAGG- -5'
19742 5' -57.5 NC_004687.1 + 13391 0.67 0.805128
Target:  5'- cGC-GCUGGG-ACACCGG-CAGguaUCCg -3'
miRNA:   3'- aCGaCGGCCCaUGUGGUCuGUCg--AGG- -5'
19742 5' -57.5 NC_004687.1 + 15464 0.73 0.448466
Target:  5'- gGCgagGCCGGGUACggcaagcgccuguggACCAGcaagcaccGCAGCUCg -3'
miRNA:   3'- aCGa--CGGCCCAUG---------------UGGUC--------UGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 18160 0.67 0.796248
Target:  5'- cGgUGCCGGuGUGgGCCGG--GGCUCg -3'
miRNA:   3'- aCgACGGCC-CAUgUGGUCugUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 18633 0.69 0.699874
Target:  5'- -aCUGCCGGGacccgaagAC-CCAGGCcuugcgcGGCUCCu -3'
miRNA:   3'- acGACGGCCCa-------UGuGGUCUG-------UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 19565 0.69 0.670738
Target:  5'- cGCUGCCGaacACACCGGGCgcgAGCUUg -3'
miRNA:   3'- aCGACGGCccaUGUGGUCUG---UCGAGg -5'
19742 5' -57.5 NC_004687.1 + 20101 0.68 0.749834
Target:  5'- cGCgcagGCUcGGUACACCAacCAGcCUCCg -3'
miRNA:   3'- aCGa---CGGcCCAUGUGGUcuGUC-GAGG- -5'
19742 5' -57.5 NC_004687.1 + 24872 0.68 0.753656
Target:  5'- cGUUGaUCGGGUGCACgCGGGCcuucuugagccgcucGGCgUCCg -3'
miRNA:   3'- aCGAC-GGCCCAUGUG-GUCUG---------------UCG-AGG- -5'
19742 5' -57.5 NC_004687.1 + 26538 0.66 0.861765
Target:  5'- cGCgGUCGGGccgACGuucuucgUCGGuCAGCUCCg -3'
miRNA:   3'- aCGaCGGCCCa--UGU-------GGUCuGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 28321 0.68 0.759357
Target:  5'- uUGCcgagGCCGGGUcACAgaccgcCCGGAUGGC-CCu -3'
miRNA:   3'- -ACGa---CGGCCCA-UGU------GGUCUGUCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 28608 0.66 0.847047
Target:  5'- aGC-GCaCGGccaACACCugguuuGACGGCUCCg -3'
miRNA:   3'- aCGaCG-GCCca-UGUGGu-----CUGUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.