miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 5' -57.5 NC_004687.1 + 145038 1.12 0.001209
Target:  5'- gUGCUGCCGGGUACACCAGACAGCUCCa -3'
miRNA:   3'- -ACGACGGCCCAUGUGGUCUGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 42682 0.77 0.280703
Target:  5'- cGCUGCCGGGcgACACC-GAgAGCaCCa -3'
miRNA:   3'- aCGACGGCCCa-UGUGGuCUgUCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 129536 0.75 0.368068
Target:  5'- gGCcagGCCGGGUcacggcgcGgGCCGGACAGUUCUu -3'
miRNA:   3'- aCGa--CGGCCCA--------UgUGGUCUGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 120597 0.75 0.368068
Target:  5'- cUGCUGCCGGGcugGCAUC-GACGGUgCCc -3'
miRNA:   3'- -ACGACGGCCCa--UGUGGuCUGUCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 54179 0.75 0.368068
Target:  5'- cGCUGCUGGGgcCACCcAGGCcgcuGCUCg -3'
miRNA:   3'- aCGACGGCCCauGUGG-UCUGu---CGAGg -5'
19742 5' -57.5 NC_004687.1 + 134808 0.75 0.37614
Target:  5'- cUGCUgGCCGGGcuuguCGCCGGGguGCUCa -3'
miRNA:   3'- -ACGA-CGGCCCau---GUGGUCUguCGAGg -5'
19742 5' -57.5 NC_004687.1 + 74721 0.74 0.424368
Target:  5'- cGCUGCCGGGUcCACCGaccuGcuggaagccaugaaGCGGCUCUc -3'
miRNA:   3'- aCGACGGCCCAuGUGGU----C--------------UGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 15464 0.73 0.448466
Target:  5'- gGCgagGCCGGGUACggcaagcgccuguggACCAGcaagcaccGCAGCUCg -3'
miRNA:   3'- aCGa--CGGCCCAUG---------------UGGUC--------UGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 134414 0.73 0.463099
Target:  5'- cUGCUcgcccaGCCGGGUgcgggcggcgaGCACCuccaGGACgAGCUCCu -3'
miRNA:   3'- -ACGA------CGGCCCA-----------UGUGG----UCUG-UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 91760 0.72 0.500726
Target:  5'- cGCUcGCCGGGgaacuggGC-CCAGACGcGCaUCCg -3'
miRNA:   3'- aCGA-CGGCCCa------UGuGGUCUGU-CG-AGG- -5'
19742 5' -57.5 NC_004687.1 + 40053 0.72 0.528828
Target:  5'- gGCUGaCCGGGUugAugaacugCCAGguguGCAGCUCg -3'
miRNA:   3'- aCGAC-GGCCCAugU-------GGUC----UGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 9936 0.72 0.539641
Target:  5'- gGUUGuCCGGGccUGCCGGGC-GCUCCa -3'
miRNA:   3'- aCGAC-GGCCCauGUGGUCUGuCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 137798 0.71 0.559486
Target:  5'- gUGCUGgCGGcGUggccGCGCUcaACAGCUCCg -3'
miRNA:   3'- -ACGACgGCC-CA----UGUGGucUGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 134136 0.71 0.559486
Target:  5'- cUGCUGCgGGGUcaACUcgucgaagaGGACaAGCUCCa -3'
miRNA:   3'- -ACGACGgCCCAugUGG---------UCUG-UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 2860 0.71 0.559486
Target:  5'- cUGCUG-CGGGUGCGCC-GAguGCgaCCa -3'
miRNA:   3'- -ACGACgGCCCAUGUGGuCUguCGa-GG- -5'
19742 5' -57.5 NC_004687.1 + 82030 0.71 0.56348
Target:  5'- gGCguagaGCCGGGgguccugcugagcgAUGCCGGACAGCUgCu -3'
miRNA:   3'- aCGa----CGGCCCa-------------UGUGGUCUGUCGAgG- -5'
19742 5' -57.5 NC_004687.1 + 124887 0.71 0.569485
Target:  5'- cGCUGCCaGGGcucggGCACCucAUAGCUCg -3'
miRNA:   3'- aCGACGG-CCCa----UGUGGucUGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 39446 0.71 0.569485
Target:  5'- cGCUGCCGGuc-CGCCuccGGguGCUCCc -3'
miRNA:   3'- aCGACGGCCcauGUGGu--CUguCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 101809 0.71 0.583556
Target:  5'- cGCUGCCGGGUugaucgaggccacccGCaugGCCAGGuagugcggggccCGGCUCa -3'
miRNA:   3'- aCGACGGCCCA---------------UG---UGGUCU------------GUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 77887 0.71 0.589608
Target:  5'- cUGCUGCUGGGcgaugACACCucuGGCGGUgugggagCCc -3'
miRNA:   3'- -ACGACGGCCCa----UGUGGu--CUGUCGa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.