miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 3' -53.4 NC_004687.1 + 108473 0.66 0.976719
Target:  5'- aGUCCUggccgGGUgGGCAGUCGGCa---- -3'
miRNA:   3'- gCAGGAa----CUAgCCGUCGGUUGagacc -5'
19743 3' -53.4 NC_004687.1 + 101070 0.66 0.974161
Target:  5'- gGUgCCcUGggCGGCGuuaaguucGuCCAGCUCUGGa -3'
miRNA:   3'- gCA-GGaACuaGCCGU--------C-GGUUGAGACC- -5'
19743 3' -53.4 NC_004687.1 + 123760 0.66 0.974161
Target:  5'- uCGUCCccgcgcuugGGUCGGguGCCGACg---- -3'
miRNA:   3'- -GCAGGaa-------CUAGCCguCGGUUGagacc -5'
19743 3' -53.4 NC_004687.1 + 130018 0.66 0.971689
Target:  5'- uGUCaCUUGAaaaugUCGGCAGCCAucaccaugucuccguCUCUu- -3'
miRNA:   3'- gCAG-GAACU-----AGCCGUCGGUu--------------GAGAcc -5'
19743 3' -53.4 NC_004687.1 + 44828 0.66 0.971404
Target:  5'- --aCCUUGGUguaggCGGCgaucgcGGCCAGCUCgccGGg -3'
miRNA:   3'- gcaGGAACUA-----GCCG------UCGGUUGAGa--CC- -5'
19743 3' -53.4 NC_004687.1 + 126721 0.66 0.971404
Target:  5'- gGUCCUcGAagUCgGGCAGCUGcCgUCUGGa -3'
miRNA:   3'- gCAGGAaCU--AG-CCGUCGGUuG-AGACC- -5'
19743 3' -53.4 NC_004687.1 + 47842 0.66 0.971404
Target:  5'- aCGUCCUg---UGGCAGCagaAGCagUGGa -3'
miRNA:   3'- -GCAGGAacuaGCCGUCGg--UUGagACC- -5'
19743 3' -53.4 NC_004687.1 + 94365 0.66 0.971117
Target:  5'- gGUUgUUGAUCGGCgcccgcagGGCCAacaggucGCUCaGGc -3'
miRNA:   3'- gCAGgAACUAGCCG--------UCGGU-------UGAGaCC- -5'
19743 3' -53.4 NC_004687.1 + 154681 0.66 0.968442
Target:  5'- gCGUCUg----CGGCAGCuCGACggcCUGGu -3'
miRNA:   3'- -GCAGGaacuaGCCGUCG-GUUGa--GACC- -5'
19743 3' -53.4 NC_004687.1 + 107958 0.66 0.965269
Target:  5'- cCGgCUUcGGUCGGCugGGCCGGaUCUGGg -3'
miRNA:   3'- -GCaGGAaCUAGCCG--UCGGUUgAGACC- -5'
19743 3' -53.4 NC_004687.1 + 137405 0.66 0.965269
Target:  5'- uCGUCCcagaGGUCGGCagcGGCCAGCag-GGc -3'
miRNA:   3'- -GCAGGaa--CUAGCCG---UCGGUUGagaCC- -5'
19743 3' -53.4 NC_004687.1 + 44964 0.66 0.965269
Target:  5'- -cUCCUUG-UUGGUGGCCAugUCg-- -3'
miRNA:   3'- gcAGGAACuAGCCGUCGGUugAGacc -5'
19743 3' -53.4 NC_004687.1 + 46642 0.66 0.965269
Target:  5'- gCGggCCUUGAugaagUCGaaGUAGCCGACcgUCUGGc -3'
miRNA:   3'- -GCa-GGAACU-----AGC--CGUCGGUUG--AGACC- -5'
19743 3' -53.4 NC_004687.1 + 146162 0.67 0.961877
Target:  5'- uGUCCUcccGAagGGCAGCgCGcaccGCUCUGa -3'
miRNA:   3'- gCAGGAa--CUagCCGUCG-GU----UGAGACc -5'
19743 3' -53.4 NC_004687.1 + 34875 0.67 0.961877
Target:  5'- --cCCUUGAUCaGCccGGCCA--UCUGGa -3'
miRNA:   3'- gcaGGAACUAGcCG--UCGGUugAGACC- -5'
19743 3' -53.4 NC_004687.1 + 120453 0.67 0.961526
Target:  5'- uCGUCCUaccggugcggaucUGGUCGccgaCGGCCAACgcgcccCUGGa -3'
miRNA:   3'- -GCAGGA-------------ACUAGCc---GUCGGUUGa-----GACC- -5'
19743 3' -53.4 NC_004687.1 + 93916 0.67 0.946034
Target:  5'- cCGUCgCUgGGUCGGUAGCuCAcaccuucuccgcGCUCUGc -3'
miRNA:   3'- -GCAG-GAaCUAGCCGUCG-GU------------UGAGACc -5'
19743 3' -53.4 NC_004687.1 + 111534 0.67 0.941484
Target:  5'- gGUCCagcGUCGGCGagcuGCCGACcuuUCUGGc -3'
miRNA:   3'- gCAGGaacUAGCCGU----CGGUUG---AGACC- -5'
19743 3' -53.4 NC_004687.1 + 11543 0.67 0.941484
Target:  5'- gGUCCggggcggUGAUCGGCGGCgGAgUa-GGa -3'
miRNA:   3'- gCAGGa------ACUAGCCGUCGgUUgAgaCC- -5'
19743 3' -53.4 NC_004687.1 + 92728 0.67 0.941484
Target:  5'- gGUCCUggcacagCGGCGGCUcGCcCUGGu -3'
miRNA:   3'- gCAGGAacua---GCCGUCGGuUGaGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.