Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19744 | 3' | -60.5 | NC_004687.1 | + | 108046 | 0.66 | 0.693187 |
Target: 5'- cGGUCGGgCAUGUCGcUGaUGGaGCCgUCg -3' miRNA: 3'- uCCAGCCgGUGCAGU-ACgACC-CGG-AG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 21866 | 0.66 | 0.703015 |
Target: 5'- cGGUCGGCgccagCGCGagAUGCU-GGCCa- -3' miRNA: 3'- uCCAGCCG-----GUGCagUACGAcCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 6954 | 0.66 | 0.712785 |
Target: 5'- cGGUguccUGGUCGCGaUCAUgGCUGucaucuGGCCUCg -3' miRNA: 3'- uCCA----GCCGGUGC-AGUA-CGAC------CCGGAG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 27160 | 0.66 | 0.712785 |
Target: 5'- cGGGcCGGUgCGCGUgGUG-UGGGCCg- -3' miRNA: 3'- -UCCaGCCG-GUGCAgUACgACCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 48439 | 0.66 | 0.712785 |
Target: 5'- -cGcCGGUgCGCGUggCGUGCUGGGCC-Cg -3' miRNA: 3'- ucCaGCCG-GUGCA--GUACGACCCGGaG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 122469 | 0.66 | 0.722491 |
Target: 5'- cGGcUCGGCUccuguucgGCGUCA-GCUGccGCCUCg -3' miRNA: 3'- uCC-AGCCGG--------UGCAGUaCGACc-CGGAG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 97123 | 0.66 | 0.722491 |
Target: 5'- uGGGUCGGCgG-GUCGUacgGC-GGGCCg- -3' miRNA: 3'- -UCCAGCCGgUgCAGUA---CGaCCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 106441 | 0.66 | 0.712785 |
Target: 5'- -cGUCGGCCAUGa---GCUGggcacGGCCUCg -3' miRNA: 3'- ucCAGCCGGUGCaguaCGAC-----CCGGAG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 75269 | 0.66 | 0.712785 |
Target: 5'- cAGGUCGGCCuuGgCA-GCcaGGGCCa- -3' miRNA: 3'- -UCCAGCCGGugCaGUaCGa-CCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 71502 | 0.66 | 0.693187 |
Target: 5'- gAGGUCcucaagcGCCAgGUCGcGCUGGGCg-- -3' miRNA: 3'- -UCCAGc------CGGUgCAGUaCGACCCGgag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 4429 | 0.66 | 0.693187 |
Target: 5'- aGGGUCGaggaucGUgCGCGUaaccUGCUGGGCCUg -3' miRNA: 3'- -UCCAGC------CG-GUGCAgu--ACGACCCGGAg -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 137413 | 0.66 | 0.693187 |
Target: 5'- gAGGUCGGCaGCGgccaGCaGGGCCa- -3' miRNA: 3'- -UCCAGCCGgUGCaguaCGaCCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 100475 | 0.66 | 0.693187 |
Target: 5'- uGGUCcgcugGGCCACGUCcuugGUGgagucaUGGGCCg- -3' miRNA: 3'- uCCAG-----CCGGUGCAG----UACg-----ACCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 132117 | 0.66 | 0.673393 |
Target: 5'- uGGUCGGgacgaCCACGUCGaGCUucuGGGCUc- -3' miRNA: 3'- uCCAGCC-----GGUGCAGUaCGA---CCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 35624 | 0.66 | 0.68331 |
Target: 5'- cGGUCGGUgcCGUCGccgggGUcgUGGGCCUUg -3' miRNA: 3'- uCCAGCCGguGCAGUa----CG--ACCCGGAG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 92059 | 0.67 | 0.653471 |
Target: 5'- cGGUaGGCCGCGcCGcGCUGcaguGCCUCa -3' miRNA: 3'- uCCAgCCGGUGCaGUaCGACc---CGGAG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 111185 | 0.67 | 0.639483 |
Target: 5'- cGGGUUGGUCGCGcugccugccgcacCAUGC-GGGCCg- -3' miRNA: 3'- -UCCAGCCGGUGCa------------GUACGaCCCGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 88329 | 0.67 | 0.647479 |
Target: 5'- gGGGUCccagccgcgaugccaGGUCGCGUCGuacaucUGCUcGGGCgUCu -3' miRNA: 3'- -UCCAG---------------CCGGUGCAGU------ACGA-CCCGgAG- -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 148505 | 0.67 | 0.643482 |
Target: 5'- gAGGaCGGCCA-GUCGcUGCUGGaGCUg- -3' miRNA: 3'- -UCCaGCCGGUgCAGU-ACGACC-CGGag -5' |
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19744 | 3' | -60.5 | NC_004687.1 | + | 51179 | 0.67 | 0.663444 |
Target: 5'- aAGGUCGGCgGCaUCcagcGcCUGGGCCa- -3' miRNA: 3'- -UCCAGCCGgUGcAGua--C-GACCCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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