miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 3' -60.5 NC_004687.1 + 3856 0.68 0.583622
Target:  5'- aAGGUCGGUgGcCGgggugGCUGGGCCc- -3'
miRNA:   3'- -UCCAGCCGgU-GCagua-CGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 4429 0.66 0.693187
Target:  5'- aGGGUCGaggaucGUgCGCGUaaccUGCUGGGCCUg -3'
miRNA:   3'- -UCCAGC------CG-GUGCAgu--ACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 5480 0.72 0.350901
Target:  5'- gAGGaCGGCgACGUCuu-CUGGGCCUa -3'
miRNA:   3'- -UCCaGCCGgUGCAGuacGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 6954 0.66 0.712785
Target:  5'- cGGUguccUGGUCGCGaUCAUgGCUGucaucuGGCCUCg -3'
miRNA:   3'- uCCA----GCCGGUGC-AGUA-CGAC------CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 8503 0.7 0.47781
Target:  5'- aAGG-CGaGCCG-GUCAUGCUGGuGCCg- -3'
miRNA:   3'- -UCCaGC-CGGUgCAGUACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 14975 0.69 0.534582
Target:  5'- cGGUUGGCCAgGUCGgggucuucgGCgacGGCCUUg -3'
miRNA:   3'- uCCAGCCGGUgCAGUa--------CGac-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 14983 0.69 0.544288
Target:  5'- uGGagGGCCGCGaagagaGCUGGGCCg- -3'
miRNA:   3'- uCCagCCGGUGCagua--CGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 16096 0.7 0.476889
Target:  5'- cGGUUGGCCACGguguaugUCGUGgUcaGGGCCa- -3'
miRNA:   3'- uCCAGCCGGUGC-------AGUACgA--CCCGGag -5'
19744 3' -60.5 NC_004687.1 + 20507 0.68 0.59256
Target:  5'- cGGUCGGCCAgGgccugcaUCAUGgacccGGCCUCg -3'
miRNA:   3'- uCCAGCCGGUgC-------AGUACgac--CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 21866 0.66 0.703015
Target:  5'- cGGUCGGCgccagCGCGagAUGCU-GGCCa- -3'
miRNA:   3'- uCCAGCCG-----GUGCagUACGAcCCGGag -5'
19744 3' -60.5 NC_004687.1 + 27160 0.66 0.712785
Target:  5'- cGGGcCGGUgCGCGUgGUG-UGGGCCg- -3'
miRNA:   3'- -UCCaGCCG-GUGCAgUACgACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 29845 0.72 0.343335
Target:  5'- cGGGUCagcgGGaCCACGagCAUGUUGGGCCg- -3'
miRNA:   3'- -UCCAG----CC-GGUGCa-GUACGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 35624 0.66 0.68331
Target:  5'- cGGUCGGUgcCGUCGccgggGUcgUGGGCCUUg -3'
miRNA:   3'- uCCAGCCGguGCAGUa----CG--ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 38535 0.71 0.415588
Target:  5'- gAGGUCGGCCAUGUCGacgaccgaGC-GcGGCCUg -3'
miRNA:   3'- -UCCAGCCGGUGCAGUa-------CGaC-CCGGAg -5'
19744 3' -60.5 NC_004687.1 + 48439 0.66 0.712785
Target:  5'- -cGcCGGUgCGCGUggCGUGCUGGGCC-Cg -3'
miRNA:   3'- ucCaGCCG-GUGCA--GUACGACCCGGaG- -5'
19744 3' -60.5 NC_004687.1 + 51179 0.67 0.663444
Target:  5'- aAGGUCGGCgGCaUCcagcGcCUGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGcAGua--C-GACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 56399 0.68 0.554051
Target:  5'- -cGUCGGCaguCGUCgGUGCgggUGGGCUUCg -3'
miRNA:   3'- ucCAGCCGgu-GCAG-UACG---ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 66694 0.68 0.587591
Target:  5'- uGGUCGGCgGCGgCAUcuauuccggcggcgcGCgGGGCUUCu -3'
miRNA:   3'- uCCAGCCGgUGCaGUA---------------CGaCCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 68979 0.68 0.603513
Target:  5'- cGGUUGGCCGgGUCcaccUGCUGcGCCg- -3'
miRNA:   3'- uCCAGCCGGUgCAGu---ACGACcCGGag -5'
19744 3' -60.5 NC_004687.1 + 70995 0.68 0.573723
Target:  5'- -cGUCGGCCuugaggaccGCGUCuggGCccgGGGUCUCg -3'
miRNA:   3'- ucCAGCCGG---------UGCAGua-CGa--CCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.