miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 3' -60.5 NC_004687.1 + 142653 1.09 0.00098
Target:  5'- cAGGUCGGCCACGUCAUGCUGGGCCUCg -3'
miRNA:   3'- -UCCAGCCGGUGCAGUACGACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 110951 0.79 0.128892
Target:  5'- gGGGUCGGCgAUGUUGuucUGCUGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGCAGU---ACGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 150777 0.76 0.221924
Target:  5'- uGGUUGGCCAUGUCcuggGCguaGGCCUCa -3'
miRNA:   3'- uCCAGCCGGUGCAGua--CGac-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 102187 0.73 0.307283
Target:  5'- cGGGacgaUCGGCCACGcUCAgccGgaGGGCCUUg -3'
miRNA:   3'- -UCC----AGCCGGUGC-AGUa--CgaCCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 29845 0.72 0.343335
Target:  5'- cGGGUCagcgGGaCCACGagCAUGUUGGGCCg- -3'
miRNA:   3'- -UCCAG----CC-GGUGCa-GUACGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 5480 0.72 0.350901
Target:  5'- gAGGaCGGCgACGUCuu-CUGGGCCUa -3'
miRNA:   3'- -UCCaGCCGgUGCAGuacGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 85105 0.72 0.382335
Target:  5'- --uUCGGCCACGc---GCUGGGCCUg -3'
miRNA:   3'- uccAGCCGGUGCaguaCGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 38535 0.71 0.415588
Target:  5'- gAGGUCGGCCAUGUCGacgaccgaGC-GcGGCCUg -3'
miRNA:   3'- -UCCAGCCGGUGCAGUa-------CGaC-CCGGAg -5'
19744 3' -60.5 NC_004687.1 + 102519 0.71 0.424174
Target:  5'- cGGGcgaUGGCCGCGauggccagcUCcUGCUGGGCCUg -3'
miRNA:   3'- -UCCa--GCCGGUGC---------AGuACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 142459 0.7 0.46772
Target:  5'- uGGUcacccCGGCCuACGUCGcUGCUcaggacgcgcugcGGGCCUCc -3'
miRNA:   3'- uCCA-----GCCGG-UGCAGU-ACGA-------------CCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 16096 0.7 0.476889
Target:  5'- cGGUUGGCCACGguguaugUCGUGgUcaGGGCCa- -3'
miRNA:   3'- uCCAGCCGGUGC-------AGUACgA--CCCGGag -5'
19744 3' -60.5 NC_004687.1 + 81413 0.7 0.47781
Target:  5'- cGGGUUcagGGCCAg--CAUGCgggccUGGGCCUCg -3'
miRNA:   3'- -UCCAG---CCGGUgcaGUACG-----ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 8503 0.7 0.47781
Target:  5'- aAGG-CGaGCCG-GUCAUGCUGGuGCCg- -3'
miRNA:   3'- -UCCaGC-CGGUgCAGUACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 105125 0.7 0.47781
Target:  5'- -aGUCGGCuucCACGUCGaaUGCUGGuGCCa- -3'
miRNA:   3'- ucCAGCCG---GUGCAGU--ACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 90591 0.69 0.496426
Target:  5'- uGGU-GGUCACGUCGUGCUccuuacGGGCuCUg -3'
miRNA:   3'- uCCAgCCGGUGCAGUACGA------CCCG-GAg -5'
19744 3' -60.5 NC_004687.1 + 14975 0.69 0.534582
Target:  5'- cGGUUGGCCAgGUCGgggucuucgGCgacGGCCUUg -3'
miRNA:   3'- uCCAGCCGGUgCAGUa--------CGac-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 14983 0.69 0.544288
Target:  5'- uGGagGGCCGCGaagagaGCUGGGCCg- -3'
miRNA:   3'- uCCagCCGGUGCagua--CGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 90207 0.68 0.554051
Target:  5'- cGGU-GGCCAUGaUGUGCUGGaagaagGCCUCg -3'
miRNA:   3'- uCCAgCCGGUGCaGUACGACC------CGGAG- -5'
19744 3' -60.5 NC_004687.1 + 56399 0.68 0.554051
Target:  5'- -cGUCGGCaguCGUCgGUGCgggUGGGCUUCg -3'
miRNA:   3'- ucCAGCCGgu-GCAG-UACG---ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 124817 0.68 0.567803
Target:  5'- cAGGUCGGUCggcaucaucagguggGCGuugccggaggugUCcgGCUGGGCCg- -3'
miRNA:   3'- -UCCAGCCGG---------------UGC------------AGuaCGACCCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.