miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 3' -60.5 NC_004687.1 + 5480 0.72 0.350901
Target:  5'- gAGGaCGGCgACGUCuu-CUGGGCCUa -3'
miRNA:   3'- -UCCaGCCGgUGCAGuacGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 48439 0.66 0.712785
Target:  5'- -cGcCGGUgCGCGUggCGUGCUGGGCC-Cg -3'
miRNA:   3'- ucCaGCCG-GUGCA--GUACGACCCGGaG- -5'
19744 3' -60.5 NC_004687.1 + 27160 0.66 0.712785
Target:  5'- cGGGcCGGUgCGCGUgGUG-UGGGCCg- -3'
miRNA:   3'- -UCCaGCCG-GUGCAgUACgACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 6954 0.66 0.712785
Target:  5'- cGGUguccUGGUCGCGaUCAUgGCUGucaucuGGCCUCg -3'
miRNA:   3'- uCCA----GCCGGUGC-AGUA-CGAC------CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 21866 0.66 0.703015
Target:  5'- cGGUCGGCgccagCGCGagAUGCU-GGCCa- -3'
miRNA:   3'- uCCAGCCG-----GUGCagUACGAcCCGGag -5'
19744 3' -60.5 NC_004687.1 + 71502 0.66 0.693187
Target:  5'- gAGGUCcucaagcGCCAgGUCGcGCUGGGCg-- -3'
miRNA:   3'- -UCCAGc------CGGUgCAGUaCGACCCGgag -5'
19744 3' -60.5 NC_004687.1 + 4429 0.66 0.693187
Target:  5'- aGGGUCGaggaucGUgCGCGUaaccUGCUGGGCCUg -3'
miRNA:   3'- -UCCAGC------CG-GUGCAgu--ACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 51179 0.67 0.663444
Target:  5'- aAGGUCGGCgGCaUCcagcGcCUGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGcAGua--C-GACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 148505 0.67 0.643482
Target:  5'- gAGGaCGGCCA-GUCGcUGCUGGaGCUg- -3'
miRNA:   3'- -UCCaGCCGGUgCAGU-ACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 93471 0.68 0.597535
Target:  5'- cGGagGGCCAgcCGUgAgccccggauggguccUGCUGGGCCUg -3'
miRNA:   3'- uCCagCCGGU--GCAgU---------------ACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 85105 0.72 0.382335
Target:  5'- --uUCGGCCACGc---GCUGGGCCUg -3'
miRNA:   3'- uccAGCCGGUGCaguaCGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 142459 0.7 0.46772
Target:  5'- uGGUcacccCGGCCuACGUCGcUGCUcaggacgcgcugcGGGCCUCc -3'
miRNA:   3'- uCCA-----GCCGG-UGCAGU-ACGA-------------CCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 8503 0.7 0.47781
Target:  5'- aAGG-CGaGCCG-GUCAUGCUGGuGCCg- -3'
miRNA:   3'- -UCCaGC-CGGUgCAGUACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 14983 0.69 0.544288
Target:  5'- uGGagGGCCGCGaagagaGCUGGGCCg- -3'
miRNA:   3'- uCCagCCGGUGCagua--CGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 56399 0.68 0.554051
Target:  5'- -cGUCGGCaguCGUCgGUGCgggUGGGCUUCg -3'
miRNA:   3'- ucCAGCCGgu-GCAG-UACG---ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 66694 0.68 0.587591
Target:  5'- uGGUCGGCgGCGgCAUcuauuccggcggcgcGCgGGGCUUCu -3'
miRNA:   3'- uCCAGCCGgUGCaGUA---------------CGaCCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 142653 1.09 0.00098
Target:  5'- cAGGUCGGCCACGUCAUGCUGGGCCUCg -3'
miRNA:   3'- -UCCAGCCGGUGCAGUACGACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 97123 0.66 0.722491
Target:  5'- uGGGUCGGCgG-GUCGUacgGC-GGGCCg- -3'
miRNA:   3'- -UCCAGCCGgUgCAGUA---CGaCCCGGag -5'
19744 3' -60.5 NC_004687.1 + 106441 0.66 0.712785
Target:  5'- -cGUCGGCCAUGa---GCUGggcacGGCCUCg -3'
miRNA:   3'- ucCAGCCGGUGCaguaCGAC-----CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 75269 0.66 0.712785
Target:  5'- cAGGUCGGCCuuGgCA-GCcaGGGCCa- -3'
miRNA:   3'- -UCCAGCCGGugCaGUaCGa-CCCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.