miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 3' -52.4 NC_004687.1 + 81645 0.66 0.989526
Target:  5'- gCGGCggCGgCGGUGGUGGaGGcGGCGg -3'
miRNA:   3'- gGUUGa-GCaGCCACCACUaCCaCUGU- -5'
19746 3' -52.4 NC_004687.1 + 14261 0.66 0.989526
Target:  5'- gCCAGauagUGgCGGUGGUGgcGGUGuCAg -3'
miRNA:   3'- -GGUUga--GCaGCCACCACuaCCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 134964 0.66 0.984851
Target:  5'- gCCAGCUCGUCGGgGGUcaGcUGGgcgcccacuaGACGu -3'
miRNA:   3'- -GGUUGAGCAGCCaCCA--CuACCa---------CUGU- -5'
19746 3' -52.4 NC_004687.1 + 104962 0.66 0.984851
Target:  5'- gCCAGgUCGaggCGGUugaGGcgGAUGGUGAUc -3'
miRNA:   3'- -GGUUgAGCa--GCCA---CCa-CUACCACUGu -5'
19746 3' -52.4 NC_004687.1 + 94248 0.66 0.98375
Target:  5'- uCC-GCUUGUUGGUcagGGUGGccguggcggaguucuUGGUGGCGu -3'
miRNA:   3'- -GGuUGAGCAGCCA---CCACU---------------ACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 6740 0.66 0.982984
Target:  5'- gCAcCUCGUCGGUGGUcAUGcggcgcggggcuGUGGCc -3'
miRNA:   3'- gGUuGAGCAGCCACCAcUAC------------CACUGu -5'
19746 3' -52.4 NC_004687.1 + 85093 0.66 0.980947
Target:  5'- -aGGCUgGUCGGguc-GGUGGUGACGc -3'
miRNA:   3'- ggUUGAgCAGCCaccaCUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 37931 0.66 0.980302
Target:  5'- aCCGGaugccCUCGUCGGUgagGGUGAacccggcaccggacUGGUuGACGu -3'
miRNA:   3'- -GGUU-----GAGCAGCCA---CCACU--------------ACCA-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 132247 0.67 0.978734
Target:  5'- uCCuug-UGUgGGUGGUGGUGGUG-Cu -3'
miRNA:   3'- -GGuugaGCAgCCACCACUACCACuGu -5'
19746 3' -52.4 NC_004687.1 + 3848 0.67 0.976336
Target:  5'- gCCAugUaaagGUCGGUGGccggGGUGGCu -3'
miRNA:   3'- -GGUugAg---CAGCCACCacuaCCACUGu -5'
19746 3' -52.4 NC_004687.1 + 35596 0.67 0.976336
Target:  5'- --cGCguaGUCGGUcucGUGGUGGUGGCGc -3'
miRNA:   3'- gguUGag-CAGCCAc--CACUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 139499 0.67 0.973746
Target:  5'- uCCAGggUGUaGGUGGUGcgcagauggGUGGUGGCGa -3'
miRNA:   3'- -GGUUgaGCAgCCACCAC---------UACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 63261 0.67 0.972096
Target:  5'- aCCAGCgcgguggCGUCGGUGuaggcgaccGcgaacgaggucucguUGAUGGUGGCGg -3'
miRNA:   3'- -GGUUGa------GCAGCCAC---------C---------------ACUACCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 137699 0.67 0.970956
Target:  5'- uCCuuCUCGUCGaugacccagguGUGGUGGccUGGUGGa- -3'
miRNA:   3'- -GGuuGAGCAGC-----------CACCACU--ACCACUgu -5'
19746 3' -52.4 NC_004687.1 + 60284 0.68 0.96475
Target:  5'- aCCGaacuACUCGUCGGccuUGGcgucgUGgcGGUGGCGu -3'
miRNA:   3'- -GGU----UGAGCAGCC---ACC-----ACuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 72242 0.68 0.961321
Target:  5'- aCCGugcGCUCGgUGGUGGUGuacgGGUcGGCGc -3'
miRNA:   3'- -GGU---UGAGCaGCCACCACua--CCA-CUGU- -5'
19746 3' -52.4 NC_004687.1 + 113844 0.68 0.961321
Target:  5'- aCCAGCUcCGUCGGguccUGGcc--GGUGACGu -3'
miRNA:   3'- -GGUUGA-GCAGCC----ACCacuaCCACUGU- -5'
19746 3' -52.4 NC_004687.1 + 131337 0.68 0.961321
Target:  5'- aCCAGCUCGUUGGccgcgcgcaUGGUGuccUGGcuccaguugaUGACGc -3'
miRNA:   3'- -GGUUGAGCAGCC---------ACCACu--ACC----------ACUGU- -5'
19746 3' -52.4 NC_004687.1 + 52774 0.68 0.957668
Target:  5'- uUCucCUUGU-GGUGGUGGUGGUG-CGu -3'
miRNA:   3'- -GGuuGAGCAgCCACCACUACCACuGU- -5'
19746 3' -52.4 NC_004687.1 + 119881 0.68 0.94839
Target:  5'- aCCAGCUCGccgccccgggccgcUCGGcuUGGUGGUGGaUGuauCAc -3'
miRNA:   3'- -GGUUGAGC--------------AGCC--ACCACUACC-ACu--GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.