miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 5' -61.6 NC_004687.1 + 137091 0.66 0.682864
Target:  5'- aCAUGCUCgcccaGCGCGaucGCGAgCUGCCGg- -3'
miRNA:   3'- cGUGCGAG-----CGCGU---CGCUgGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 145189 0.66 0.663214
Target:  5'- cGgGCGCaUCGCGCgGGUGGCCgcuggccagggCGCCGa- -3'
miRNA:   3'- -CgUGCG-AGCGCG-UCGCUGG-----------GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 150589 0.66 0.673055
Target:  5'- cCGCGCUgGUGCAGCacgaGCCCGaCGg- -3'
miRNA:   3'- cGUGCGAgCGCGUCGc---UGGGCgGCaa -5'
19748 5' -61.6 NC_004687.1 + 82054 0.66 0.682864
Target:  5'- aGCGCGUcCG-GCGGCaACCCGaCCGg- -3'
miRNA:   3'- -CGUGCGaGCgCGUCGcUGGGC-GGCaa -5'
19748 5' -61.6 NC_004687.1 + 89404 0.66 0.663214
Target:  5'- cGCugGCUgcgcggcucggCGCGguGCGACCUcgacgGCCu-- -3'
miRNA:   3'- -CGugCGA-----------GCGCguCGCUGGG-----CGGcaa -5'
19748 5' -61.6 NC_004687.1 + 113259 0.66 0.673055
Target:  5'- -aGCGCUgGUGCAGa---CCGCCGUc -3'
miRNA:   3'- cgUGCGAgCGCGUCgcugGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 11759 0.66 0.686777
Target:  5'- cCGCGCUgCGCGCgacguccaugcgaucGGCGACCgUGCCc-- -3'
miRNA:   3'- cGUGCGA-GCGCG---------------UCGCUGG-GCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 52665 0.66 0.682864
Target:  5'- aGgGCGCggGCGUAGCgGACCugguCGCCGg- -3'
miRNA:   3'- -CgUGCGagCGCGUCG-CUGG----GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 87930 0.66 0.682864
Target:  5'- -gACGUgaUCG-GUGGuCGGCCCGCCGUc -3'
miRNA:   3'- cgUGCG--AGCgCGUC-GCUGGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 56982 0.66 0.660257
Target:  5'- cGCACgGCUCgGUGCAcaccaccgguggccGCGugCUGCCGc- -3'
miRNA:   3'- -CGUG-CGAG-CGCGU--------------CGCugGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 139234 0.66 0.65335
Target:  5'- cGUACGCcacaGCGCaguccgugAGCGACCUGuCCGa- -3'
miRNA:   3'- -CGUGCGag--CGCG--------UCGCUGGGC-GGCaa -5'
19748 5' -61.6 NC_004687.1 + 65820 0.66 0.650388
Target:  5'- aCGCGCUgCGCGCAGgcgggugggaacgaUGACCgaGCCGa- -3'
miRNA:   3'- cGUGCGA-GCGCGUC--------------GCUGGg-CGGCaa -5'
19748 5' -61.6 NC_004687.1 + 90297 0.66 0.673055
Target:  5'- uGCGCaGCa-GCGCGGUGGCCacccgaCGCCGa- -3'
miRNA:   3'- -CGUG-CGagCGCGUCGCUGG------GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 27878 0.66 0.682864
Target:  5'- gGCcuCGUggaagUCGCGCGGCGugCCaCCGg- -3'
miRNA:   3'- -CGu-GCG-----AGCGCGUCGCugGGcGGCaa -5'
19748 5' -61.6 NC_004687.1 + 51689 0.66 0.633583
Target:  5'- -gACaGCUCGCGCcugcuGGCGAaCCCGCaggaGUa -3'
miRNA:   3'- cgUG-CGAGCGCG-----UCGCU-GGGCGg---CAa -5'
19748 5' -61.6 NC_004687.1 + 102196 0.66 0.643471
Target:  5'- -gACGUcccggaaGCGCAGCGGCgagCCGCCGa- -3'
miRNA:   3'- cgUGCGag-----CGCGUCGCUG---GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 101091 0.66 0.643471
Target:  5'- gGCGCGCUgGcCGCAcacCGGacacuucacCCCGCCGUUc -3'
miRNA:   3'- -CGUGCGAgC-GCGUc--GCU---------GGGCGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 48995 0.66 0.633583
Target:  5'- uGCAguCGUUCGCGCcacccGCG-CCCGCCc-- -3'
miRNA:   3'- -CGU--GCGAGCGCGu----CGCuGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 139663 0.66 0.633583
Target:  5'- cCACGCUUGCGggcaaGGcCGACCUGuCCGg- -3'
miRNA:   3'- cGUGCGAGCGCg----UC-GCUGGGC-GGCaa -5'
19748 5' -61.6 NC_004687.1 + 147670 0.66 0.673055
Target:  5'- uCACGUccucUCGgGCGGCugguagccgGACUCGCCGUc -3'
miRNA:   3'- cGUGCG----AGCgCGUCG---------CUGGGCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.