miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 5' -61.6 NC_004687.1 + 139357 0.67 0.594089
Target:  5'- cGCugGC-CGCGaCGGUGGCCaccaagGCCGa- -3'
miRNA:   3'- -CGugCGaGCGC-GUCGCUGGg-----CGGCaa -5'
19748 5' -61.6 NC_004687.1 + 85576 0.69 0.488702
Target:  5'- aCGCGCU-GUGCGGCGACgCCggaGCCGg- -3'
miRNA:   3'- cGUGCGAgCGCGUCGCUG-GG---CGGCaa -5'
19748 5' -61.6 NC_004687.1 + 138808 0.68 0.516714
Target:  5'- cGCACGC-CGCGagucauGCG-UCCGCCGg- -3'
miRNA:   3'- -CGUGCGaGCGCgu----CGCuGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 34949 0.68 0.535741
Target:  5'- gGguCGcCUC-CGCAGuUGGCCCGCCGa- -3'
miRNA:   3'- -CguGC-GAGcGCGUC-GCUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 60791 0.68 0.544384
Target:  5'- gGCAUGaCcCGCGCGGCcaacuggGACaCCGCCGg- -3'
miRNA:   3'- -CGUGC-GaGCGCGUCG-------CUG-GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 48435 0.68 0.564718
Target:  5'- uGCACGCcggugCGCGUGGCGugCUGggcCCGg- -3'
miRNA:   3'- -CGUGCGa----GCGCGUCGCugGGC---GGCaa -5'
19748 5' -61.6 NC_004687.1 + 80512 0.67 0.584264
Target:  5'- -gACGCcCGgGCGGCGGCUgccgCGCCGg- -3'
miRNA:   3'- cgUGCGaGCgCGUCGCUGG----GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 23157 0.67 0.584264
Target:  5'- -aGCGgUCGCGUGGUGACCaucaccgacagCGCCGa- -3'
miRNA:   3'- cgUGCgAGCGCGUCGCUGG-----------GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 117939 0.67 0.594089
Target:  5'- -aGCGCaagCGCGCGGUGcugCCGCCGg- -3'
miRNA:   3'- cgUGCGa--GCGCGUCGCug-GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 92289 0.69 0.488702
Target:  5'- aGCGCGCugUCGC-CAGCGGCCaugagaGCCa-- -3'
miRNA:   3'- -CGUGCG--AGCGcGUCGCUGGg-----CGGcaa -5'
19748 5' -61.6 NC_004687.1 + 111157 0.69 0.470429
Target:  5'- -gGCGCUgCgGCGCGGCG-CCCGuCCGg- -3'
miRNA:   3'- cgUGCGA-G-CGCGUCGCuGGGC-GGCaa -5'
19748 5' -61.6 NC_004687.1 + 75435 0.69 0.461424
Target:  5'- cGCGacgaGUUCGCGCGuGCGGgccgcgcuCCCGCCGa- -3'
miRNA:   3'- -CGUg---CGAGCGCGU-CGCU--------GGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 81850 0.73 0.290035
Target:  5'- gGCACGgccaGCGUgAGCGGCCUGCCGUUc -3'
miRNA:   3'- -CGUGCgag-CGCG-UCGCUGGGCGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 56703 0.72 0.317115
Target:  5'- aCACGCucgacgUCGCGCAG-GACCCGCaCGa- -3'
miRNA:   3'- cGUGCG------AGCGCGUCgCUGGGCG-GCaa -5'
19748 5' -61.6 NC_004687.1 + 144658 0.71 0.376839
Target:  5'- gGCACGC-CGgGCAGggcagcuauccCGGCCUGCCGa- -3'
miRNA:   3'- -CGUGCGaGCgCGUC-----------GCUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 36356 0.71 0.384818
Target:  5'- aGCAC-CUgGC-CAGCGACuCCGCCGa- -3'
miRNA:   3'- -CGUGcGAgCGcGUCGCUG-GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 58188 0.7 0.408581
Target:  5'- cGCGCGUUCGC-CAGCGagguggguuacugGCCUGCCa-- -3'
miRNA:   3'- -CGUGCGAGCGcGUCGC-------------UGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 12878 0.7 0.426349
Target:  5'- -gGCGCcggUGCGCGGCGGCgaUCGCCGg- -3'
miRNA:   3'- cgUGCGa--GCGCGUCGCUG--GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 6916 0.7 0.442815
Target:  5'- gGCAUGUUCGUcauucccGCAGCuGCCCucGCCGUUg -3'
miRNA:   3'- -CGUGCGAGCG-------CGUCGcUGGG--CGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 64895 0.7 0.443692
Target:  5'- cGCGCGUgggccUCgGCGCGGCGcggGCCCaGCCGa- -3'
miRNA:   3'- -CGUGCG-----AG-CGCGUCGC---UGGG-CGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.