miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 5' -61.6 NC_004687.1 + 135328 1.07 0.001242
Target:  5'- gGCACGCUCGCGCAGCGACCCGCCGUUg -3'
miRNA:   3'- -CGUGCGAGCGCGUCGCUGGGCGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 141653 0.77 0.156567
Target:  5'- cGCGcCGCUCGCGCAGC-ACCagccaGCCGUc -3'
miRNA:   3'- -CGU-GCGAGCGCGUCGcUGGg----CGGCAa -5'
19748 5' -61.6 NC_004687.1 + 56049 0.76 0.172715
Target:  5'- uGCACGCUCGUGCgucGGCGgaagcaACCCGUCGg- -3'
miRNA:   3'- -CGUGCGAGCGCG---UCGC------UGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 25536 0.74 0.258779
Target:  5'- aGCGCcuGCUUguucuucgGCGC-GCGGCCCGCCGUg -3'
miRNA:   3'- -CGUG--CGAG--------CGCGuCGCUGGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 100124 0.73 0.270939
Target:  5'- aGCGCgGUUCGCGCAGCGGgguCUCGUCGa- -3'
miRNA:   3'- -CGUG-CGAGCGCGUCGCU---GGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 81850 0.73 0.290035
Target:  5'- gGCACGgccaGCGUgAGCGGCCUGCCGUUc -3'
miRNA:   3'- -CGUGCgag-CGCG-UCGCUGGGCGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 56703 0.72 0.317115
Target:  5'- aCACGCucgacgUCGCGCAG-GACCCGCaCGa- -3'
miRNA:   3'- cGUGCG------AGCGCGUCgCUGGGCG-GCaa -5'
19748 5' -61.6 NC_004687.1 + 73482 0.72 0.338645
Target:  5'- cGCGCGCggacgGCGaAGCGAuCCCGCCGa- -3'
miRNA:   3'- -CGUGCGag---CGCgUCGCU-GGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 41118 0.72 0.346054
Target:  5'- -aACGCUCGUGCAGCGccuuguagcuggACCCGUCc-- -3'
miRNA:   3'- cgUGCGAGCGCGUCGC------------UGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 49086 0.71 0.361218
Target:  5'- aGCACggGCUCGUuCGGCGAUCCGCuCGg- -3'
miRNA:   3'- -CGUG--CGAGCGcGUCGCUGGGCG-GCaa -5'
19748 5' -61.6 NC_004687.1 + 46306 0.71 0.368972
Target:  5'- -uGCGCUCGCGCAGCGGa-UGCUGc- -3'
miRNA:   3'- cgUGCGAGCGCGUCGCUggGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 144658 0.71 0.376839
Target:  5'- gGCACGC-CGgGCAGggcagcuauccCGGCCUGCCGa- -3'
miRNA:   3'- -CGUGCGaGCgCGUC-----------GCUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 36356 0.71 0.384818
Target:  5'- aGCAC-CUgGC-CAGCGACuCCGCCGa- -3'
miRNA:   3'- -CGUGcGAgCGcGUCGCUG-GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 110103 0.7 0.401108
Target:  5'- gGCGCGCUgGaUGCcGCcGCCCGCCGa- -3'
miRNA:   3'- -CGUGCGAgC-GCGuCGcUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 58188 0.7 0.408581
Target:  5'- cGCGCGUUCGC-CAGCGagguggguuacugGCCUGCCa-- -3'
miRNA:   3'- -CGUGCGAGCGcGUCGC-------------UGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 12878 0.7 0.426349
Target:  5'- -gGCGCcggUGCGCGGCGGCgaUCGCCGg- -3'
miRNA:   3'- cgUGCGa--GCGCGUCGCUG--GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 116351 0.7 0.434971
Target:  5'- gGCugGC-CGCGUAGaaGCUCGCCGg- -3'
miRNA:   3'- -CGugCGaGCGCGUCgcUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 6916 0.7 0.442815
Target:  5'- gGCAUGUUCGUcauucccGCAGCuGCCCucGCCGUUg -3'
miRNA:   3'- -CGUGCGAGCG-------CGUCGcUGGG--CGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 75880 0.7 0.443692
Target:  5'- gGCGgGUUCGCGCauGGUGGcCCCGgCGUUg -3'
miRNA:   3'- -CGUgCGAGCGCG--UCGCU-GGGCgGCAA- -5'
19748 5' -61.6 NC_004687.1 + 76603 0.7 0.443692
Target:  5'- gGCGCGCUCuggaaguuGCGCAG--GCCCGCCu-- -3'
miRNA:   3'- -CGUGCGAG--------CGCGUCgcUGGGCGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.