miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 5' -61.6 NC_004687.1 + 2710 0.67 0.612823
Target:  5'- cCGCcCUCGCGCAGCagcagcaGGCCCGCg--- -3'
miRNA:   3'- cGUGcGAGCGCGUCG-------CUGGGCGgcaa -5'
19748 5' -61.6 NC_004687.1 + 6414 0.67 0.623693
Target:  5'- aCACGaccucCUUGCGCAGUugguccACCCGCCGg- -3'
miRNA:   3'- cGUGC-----GAGCGCGUCGc-----UGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 6916 0.7 0.442815
Target:  5'- gGCAUGUUCGUcauucccGCAGCuGCCCucGCCGUUg -3'
miRNA:   3'- -CGUGCGAGCG-------CGUCGcUGGG--CGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 7053 0.66 0.651375
Target:  5'- -uGCGCUCcagagugGCGCGguucugcGCGGCCCGCuCGg- -3'
miRNA:   3'- cgUGCGAG-------CGCGU-------CGCUGGGCG-GCaa -5'
19748 5' -61.6 NC_004687.1 + 7411 0.67 0.60394
Target:  5'- aGCGCGCcgccgCGCGCGucaaGGCCUGCCa-- -3'
miRNA:   3'- -CGUGCGa----GCGCGUcg--CUGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 7412 0.67 0.594089
Target:  5'- aGCuccaGCUC-CaGCAGCGACUgGCCGUc -3'
miRNA:   3'- -CGug--CGAGcG-CGUCGCUGGgCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 11759 0.66 0.686777
Target:  5'- cCGCGCUgCGCGCgacguccaugcgaucGGCGACCgUGCCc-- -3'
miRNA:   3'- cGUGCGA-GCGCG---------------UCGCUGG-GCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 12714 0.67 0.60394
Target:  5'- cCGCGCUCaGgGUGGCGACCCGggugucgaCGUa -3'
miRNA:   3'- cGUGCGAG-CgCGUCGCUGGGCg-------GCAa -5'
19748 5' -61.6 NC_004687.1 + 12878 0.7 0.426349
Target:  5'- -gGCGCcggUGCGCGGCGGCgaUCGCCGg- -3'
miRNA:   3'- cgUGCGa--GCGCGUCGCUG--GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 15822 0.67 0.61381
Target:  5'- uGC-CGUUgaGCGCGGUGACCagGCCGg- -3'
miRNA:   3'- -CGuGCGAg-CGCGUCGCUGGg-CGGCaa -5'
19748 5' -61.6 NC_004687.1 + 23157 0.67 0.584264
Target:  5'- -aGCGgUCGCGUGGUGACCaucaccgacagCGCCGa- -3'
miRNA:   3'- cgUGCgAGCGCGUCGCUGG-----------GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 24445 0.66 0.663214
Target:  5'- gGCAa---CGCGCAGuCGGuCCCGCCGa- -3'
miRNA:   3'- -CGUgcgaGCGCGUC-GCU-GGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 24729 0.69 0.497963
Target:  5'- cGUGCGCUUGUugGCAGgcuCGACCgCGCCGa- -3'
miRNA:   3'- -CGUGCGAGCG--CGUC---GCUGG-GCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 25238 0.68 0.516714
Target:  5'- gGCAUGCUCGC-CAGUcacCCCGUCGa- -3'
miRNA:   3'- -CGUGCGAGCGcGUCGcu-GGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 25443 0.67 0.61381
Target:  5'- uGCGuCGC-CGUGCGuGCGACCUGCgGc- -3'
miRNA:   3'- -CGU-GCGaGCGCGU-CGCUGGGCGgCaa -5'
19748 5' -61.6 NC_004687.1 + 25536 0.74 0.258779
Target:  5'- aGCGCcuGCUUguucuucgGCGC-GCGGCCCGCCGUg -3'
miRNA:   3'- -CGUG--CGAG--------CGCGuCGCUGGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 25661 0.66 0.65335
Target:  5'- -aGCGUUgGUGUAGUagGugCCGCCGUc -3'
miRNA:   3'- cgUGCGAgCGCGUCG--CugGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 27878 0.66 0.682864
Target:  5'- gGCcuCGUggaagUCGCGCGGCGugCCaCCGg- -3'
miRNA:   3'- -CGu-GCG-----AGCGCGUCGCugGGcGGCaa -5'
19748 5' -61.6 NC_004687.1 + 31782 0.66 0.663214
Target:  5'- -gGCGCUguuugugguUGCGCAGCGAgUCGCgGg- -3'
miRNA:   3'- cgUGCGA---------GCGCGUCGCUgGGCGgCaa -5'
19748 5' -61.6 NC_004687.1 + 32636 0.68 0.516714
Target:  5'- -gGCGCUUGCGCuccuCGACCUGCgCGg- -3'
miRNA:   3'- cgUGCGAGCGCGuc--GCUGGGCG-GCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.