miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 17412 0.66 0.622807
Target:  5'- gCAGAGCUGUcGGCCuuggCGGACaGCGa-GGa -3'
miRNA:   3'- -GUCUCGACGuCCGG----GCCUG-CGCcgCC- -5'
19751 3' -63.3 NC_004687.1 + 1099 0.66 0.564869
Target:  5'- -uGAGuCUGCuuGGUCCGGGCGCccgGGCc- -3'
miRNA:   3'- guCUC-GACGu-CCGGGCCUGCG---CCGcc -5'
19751 3' -63.3 NC_004687.1 + 69607 0.67 0.555327
Target:  5'- -cGGGCUGCGGGCgccgCCGGAgGCcaGGUa- -3'
miRNA:   3'- guCUCGACGUCCG----GGCCUgCG--CCGcc -5'
19751 3' -63.3 NC_004687.1 + 133899 1.08 0.000779
Target:  5'- cCAGAGCUGCAGGCCCGGACGCGGCGGc -3'
miRNA:   3'- -GUCUCGACGUCCGGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 135554 0.66 0.603401
Target:  5'- -uGGGCgGCGGGCuuGGugaACGCauGCGGg -3'
miRNA:   3'- guCUCGaCGUCCGggCC---UGCGc-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 4951 0.66 0.593724
Target:  5'- cCGGuGGC-GCAGGggguUCCGGACGCagauccucGGCGGu -3'
miRNA:   3'- -GUC-UCGaCGUCC----GGGCCUGCG--------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 42633 0.66 0.584073
Target:  5'- aCAGGGUUGCcaucGGCuuGGGCcucucucuugguGaCGGCGGu -3'
miRNA:   3'- -GUCUCGACGu---CCGggCCUG------------C-GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 11337 0.66 0.584073
Target:  5'- aUAGAGCUGgcuggcCAGGCCCaGACuGgGGUGc -3'
miRNA:   3'- -GUCUCGAC------GUCCGGGcCUG-CgCCGCc -5'
19751 3' -63.3 NC_004687.1 + 129531 0.66 0.574452
Target:  5'- -cGAGCgGcCAGGCCgGGucacgGCGCGGgcCGGa -3'
miRNA:   3'- guCUCGaC-GUCCGGgCC-----UGCGCC--GCC- -5'
19751 3' -63.3 NC_004687.1 + 106901 0.66 0.564869
Target:  5'- uGGGGCggcaugGguGGCgCCgGGGCGgGcGCGGg -3'
miRNA:   3'- gUCUCGa-----CguCCG-GG-CCUGCgC-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 67068 0.66 0.564869
Target:  5'- cCAGcuGCUGCAGGCCuuCGGccuugauCGUGGUGa -3'
miRNA:   3'- -GUCu-CGACGUCCGG--GCCu------GCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 147303 0.66 0.574452
Target:  5'- gAGGGUcgacccggUGC-GGCCUGGACuGCcaGGCGGu -3'
miRNA:   3'- gUCUCG--------ACGuCCGGGCCUG-CG--CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 81418 0.66 0.613098
Target:  5'- uCAGGGCcagcaUGCGGGCCUGGGCcucguacuucauGcCGGUGc -3'
miRNA:   3'- -GUCUCG-----ACGUCCGGGCCUG------------C-GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 139377 0.66 0.564869
Target:  5'- cCAGGGCagcggcGCGGGCCUGGGCGaaGGUc- -3'
miRNA:   3'- -GUCUCGa-----CGUCCGGGCCUGCg-CCGcc -5'
19751 3' -63.3 NC_004687.1 + 34795 0.66 0.607278
Target:  5'- uGGGGUgaUGgAcgaugaaguccacccGGcCCCGGACGUGGUGGg -3'
miRNA:   3'- gUCUCG--ACgU---------------CC-GGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 102100 0.66 0.574452
Target:  5'- cCAGggcaAGCUGCucgcucucGGCCUucuuGGccuCGCGGCGGg -3'
miRNA:   3'- -GUC----UCGACGu-------CCGGG----CCu--GCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 117526 0.66 0.564869
Target:  5'- gCGGGGCgccccgGguGGCCC--AgGCGGUGGg -3'
miRNA:   3'- -GUCUCGa-----CguCCGGGccUgCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 116372 0.67 0.555327
Target:  5'- cCGGGGCguUGCccGGCCCGGcgACGCcaGGCGc -3'
miRNA:   3'- -GUCUCG--ACGu-CCGGGCC--UGCG--CCGCc -5'
19751 3' -63.3 NC_004687.1 + 6593 0.66 0.603401
Target:  5'- cCAGAccGCUGCGGGCCaCGua-GuCGGCGa -3'
miRNA:   3'- -GUCU--CGACGUCCGG-GCcugC-GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 113063 0.66 0.584073
Target:  5'- cCAGgccguGGCUGUagccGGGCUCgcuGGugGUGGUGGg -3'
miRNA:   3'- -GUC-----UCGACG----UCCGGG---CCugCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.