miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 5' -53.8 NC_004687.1 + 54976 0.66 0.954478
Target:  5'- cCAGCUGCAGUGGUGGGGcCUGa--- -3'
miRNA:   3'- uGUUGACGUCGUCGCUCUaGACgcac -5'
19753 5' -53.8 NC_004687.1 + 142830 0.66 0.954478
Target:  5'- cGCAGC-GCGGUguuGGCGAaguaGAUCcGCGUGc -3'
miRNA:   3'- -UGUUGaCGUCG---UCGCU----CUAGaCGCAC- -5'
19753 5' -53.8 NC_004687.1 + 18953 0.66 0.95033
Target:  5'- gACGGCUGCcgugcGGCGGuCGGGAUCgGCc-- -3'
miRNA:   3'- -UGUUGACG-----UCGUC-GCUCUAGaCGcac -5'
19753 5' -53.8 NC_004687.1 + 154661 0.66 0.95033
Target:  5'- gGC-GCUGCGcuacGCuGCGAGcGUCUGCGg- -3'
miRNA:   3'- -UGuUGACGU----CGuCGCUC-UAGACGCac -5'
19753 5' -53.8 NC_004687.1 + 143170 0.66 0.95033
Target:  5'- gACGG-UGCucacCGGCGGGGUCUcGCGUGg -3'
miRNA:   3'- -UGUUgACGuc--GUCGCUCUAGA-CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 124440 0.66 0.945938
Target:  5'- cGCuGCUGCAGC-GCGcGGUCcGCGa- -3'
miRNA:   3'- -UGuUGACGUCGuCGCuCUAGaCGCac -5'
19753 5' -53.8 NC_004687.1 + 18995 0.66 0.941297
Target:  5'- cGCGACUGCAucgaaGGCGAGcgCUGgGa- -3'
miRNA:   3'- -UGUUGACGUcg---UCGCUCuaGACgCac -5'
19753 5' -53.8 NC_004687.1 + 128383 0.67 0.931262
Target:  5'- cACGGCgaguaGCGGCAGCGGGuggaUGCGc- -3'
miRNA:   3'- -UGUUGa----CGUCGUCGCUCuag-ACGCac -5'
19753 5' -53.8 NC_004687.1 + 148517 0.67 0.931262
Target:  5'- -uGACgcgcGCGGCGGCGcgcuuGGUCUGCGc- -3'
miRNA:   3'- ugUUGa---CGUCGUCGCu----CUAGACGCac -5'
19753 5' -53.8 NC_004687.1 + 62713 0.67 0.925866
Target:  5'- uACAccuACUGC-GCAGCGGaagucccugcgcGAaCUGCGUGa -3'
miRNA:   3'- -UGU---UGACGuCGUCGCU------------CUaGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 94404 0.67 0.919638
Target:  5'- aGCu-CUGCccgccccAGCccuGCGAGAUCUGCGa- -3'
miRNA:   3'- -UGuuGACG-------UCGu--CGCUCUAGACGCac -5'
19753 5' -53.8 NC_004687.1 + 136271 0.67 0.914314
Target:  5'- uACAGCUuCAGUcaCGAGGUCgaggGCGUGg -3'
miRNA:   3'- -UGUUGAcGUCGucGCUCUAGa---CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 91283 0.67 0.914314
Target:  5'- cGCAGCUGCcacaugauguuGGCcGCGuuGGUCUGCGc- -3'
miRNA:   3'- -UGUUGACG-----------UCGuCGCu-CUAGACGCac -5'
19753 5' -53.8 NC_004687.1 + 40943 0.67 0.908161
Target:  5'- aGCAACUucucCGaCAGCcGGGUCUGCGUGg -3'
miRNA:   3'- -UGUUGAc---GUcGUCGcUCUAGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 26179 0.67 0.908161
Target:  5'- uCAGCUGCggaugcgcuaugAGC-GCGAGGUCUacaaccguaacgGCGUGg -3'
miRNA:   3'- uGUUGACG------------UCGuCGCUCUAGA------------CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 34580 0.68 0.901104
Target:  5'- uGCGgguGCUGCcgagaagGGCGGCGAGAUCUcCGa- -3'
miRNA:   3'- -UGU---UGACG-------UCGUCGCUCUAGAcGCac -5'
19753 5' -53.8 NC_004687.1 + 7158 0.68 0.895108
Target:  5'- -gAAUgGCAGCGGCGA---CUGCGUGu -3'
miRNA:   3'- ugUUGaCGUCGUCGCUcuaGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 147547 0.68 0.888215
Target:  5'- aGCAGgUGCAGCAGCGGGccaugaUGCuUGu -3'
miRNA:   3'- -UGUUgACGUCGUCGCUCuag---ACGcAC- -5'
19753 5' -53.8 NC_004687.1 + 538 0.68 0.873717
Target:  5'- gACGAUguaggucgGCAGCGGCGGGggCgGgGUGg -3'
miRNA:   3'- -UGUUGa-------CGUCGUCGCUCuaGaCgCAC- -5'
19753 5' -53.8 NC_004687.1 + 25477 0.69 0.858303
Target:  5'- cCAGcCUGCAuGCGGCGGcGAUCgGCGUc -3'
miRNA:   3'- uGUU-GACGU-CGUCGCU-CUAGaCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.