miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20406 3' -62.7 NC_004688.1 + 23947 0.66 0.544864
Target:  5'- gCGCCAGGcUCGGgaucuUCCCUAggGCgCUGGCa -3'
miRNA:   3'- -GUGGUCU-AGCC-----GGGGGUa-CGgGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 14862 0.66 0.544864
Target:  5'- gGCCAGAggaGGCUcgacaCCCAaggcagacGCgCCCGGCg -3'
miRNA:   3'- gUGGUCUag-CCGG-----GGGUa-------CG-GGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 43845 0.66 0.544864
Target:  5'- nCACCGuc-CGGCaCCCCAgUGCCgUUGGCg -3'
miRNA:   3'- -GUGGUcuaGCCG-GGGGU-ACGG-GGCCG- -5'
20406 3' -62.7 NC_004688.1 + 37885 0.66 0.544864
Target:  5'- gGCgAGGUCGGCCUuaucguCCA-GCCCCucauGCg -3'
miRNA:   3'- gUGgUCUAGCCGGG------GGUaCGGGGc---CG- -5'
20406 3' -62.7 NC_004688.1 + 75886 0.66 0.53516
Target:  5'- gUACCAGAgggcggCGGgCCCCAgcuucgcggGCUUgGGCc -3'
miRNA:   3'- -GUGGUCUa-----GCCgGGGGUa--------CGGGgCCG- -5'
20406 3' -62.7 NC_004688.1 + 68233 0.66 0.53516
Target:  5'- gGCCAGAUC-GCUCgCCA-GCgagUCCGGCa -3'
miRNA:   3'- gUGGUCUAGcCGGG-GGUaCG---GGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 104123 0.66 0.525518
Target:  5'- gGCCAGAcugcaaGGCUgCauugGUGCCCgCGGCg -3'
miRNA:   3'- gUGGUCUag----CCGGgGg---UACGGG-GCCG- -5'
20406 3' -62.7 NC_004688.1 + 36531 0.66 0.525518
Target:  5'- cCACCGGGUCaacaCCgUCAuUGCCCaCGGCg -3'
miRNA:   3'- -GUGGUCUAGcc--GGgGGU-ACGGG-GCCG- -5'
20406 3' -62.7 NC_004688.1 + 52844 0.66 0.525518
Target:  5'- aACC---UCGGCCCCguUcaGgCCCGGCg -3'
miRNA:   3'- gUGGucuAGCCGGGGguA--CgGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 79474 0.66 0.515942
Target:  5'- uCGCCGcGGUCucggcugauaGGCCaCCC--GCUCCGGCa -3'
miRNA:   3'- -GUGGU-CUAG----------CCGG-GGGuaCGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 20299 0.66 0.515942
Target:  5'- cCGCgGGGUCGGCCagguugugcaCCGUGCCaucuaGGUu -3'
miRNA:   3'- -GUGgUCUAGCCGGg---------GGUACGGgg---CCG- -5'
20406 3' -62.7 NC_004688.1 + 100562 0.66 0.515942
Target:  5'- uUugCGGcgauacugCGGCCCCCc-GCgCCGGCc -3'
miRNA:   3'- -GugGUCua------GCCGGGGGuaCGgGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 32265 0.66 0.506437
Target:  5'- gCACCAGcugcaaccgaAUCGGCgCgCCCGUGCCCa--- -3'
miRNA:   3'- -GUGGUC----------UAGCCG-G-GGGUACGGGgccg -5'
20406 3' -62.7 NC_004688.1 + 4595 0.66 0.506437
Target:  5'- gGCCAGGUCaaucGCUUCC-UG-CCCGGCa -3'
miRNA:   3'- gUGGUCUAGc---CGGGGGuACgGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 17085 0.66 0.506437
Target:  5'- gACCAGcaucgCGGCCUgCAUcauccagucGCCuuGGCg -3'
miRNA:   3'- gUGGUCua---GCCGGGgGUA---------CGGggCCG- -5'
20406 3' -62.7 NC_004688.1 + 87392 0.66 0.497008
Target:  5'- gACCA--UCGGUgUUCAUGCCCaCGGUc -3'
miRNA:   3'- gUGGUcuAGCCGgGGGUACGGG-GCCG- -5'
20406 3' -62.7 NC_004688.1 + 78750 0.66 0.497008
Target:  5'- -uCCGaGUCGGUgCCCCAgaucgGCUUCGGCg -3'
miRNA:   3'- guGGUcUAGCCG-GGGGUa----CGGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 5499 0.67 0.478393
Target:  5'- aCGCCGccGUCGGagUCCAUGaUCCCGGCg -3'
miRNA:   3'- -GUGGUc-UAGCCggGGGUAC-GGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 24445 0.67 0.469215
Target:  5'- gGCguGAUCGGCCCC-AUGgggacaucgauCUUCGGCa -3'
miRNA:   3'- gUGguCUAGCCGGGGgUAC-----------GGGGCCG- -5'
20406 3' -62.7 NC_004688.1 + 4388 0.67 0.469215
Target:  5'- gCGCCucagaaaugagaGGGUugaUGGUCUCgGUGCCCUGGCu -3'
miRNA:   3'- -GUGG------------UCUA---GCCGGGGgUACGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.