Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
20406 | 3' | -62.7 | NC_004688.1 | + | 14862 | 0.66 | 0.544864 |
Target: 5'- gGCCAGAggaGGCUcgacaCCCAaggcagacGCgCCCGGCg -3' miRNA: 3'- gUGGUCUag-CCGG-----GGGUa-------CG-GGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 37885 | 0.66 | 0.544864 |
Target: 5'- gGCgAGGUCGGCCUuaucguCCA-GCCCCucauGCg -3' miRNA: 3'- gUGgUCUAGCCGGG------GGUaCGGGGc---CG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 23947 | 0.66 | 0.544864 |
Target: 5'- gCGCCAGGcUCGGgaucuUCCCUAggGCgCUGGCa -3' miRNA: 3'- -GUGGUCU-AGCC-----GGGGGUa-CGgGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 43845 | 0.66 | 0.544864 |
Target: 5'- nCACCGuc-CGGCaCCCCAgUGCCgUUGGCg -3' miRNA: 3'- -GUGGUcuaGCCG-GGGGU-ACGG-GGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 75886 | 0.66 | 0.53516 |
Target: 5'- gUACCAGAgggcggCGGgCCCCAgcuucgcggGCUUgGGCc -3' miRNA: 3'- -GUGGUCUa-----GCCgGGGGUa--------CGGGgCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 68233 | 0.66 | 0.53516 |
Target: 5'- gGCCAGAUC-GCUCgCCA-GCgagUCCGGCa -3' miRNA: 3'- gUGGUCUAGcCGGG-GGUaCG---GGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 104123 | 0.66 | 0.525518 |
Target: 5'- gGCCAGAcugcaaGGCUgCauugGUGCCCgCGGCg -3' miRNA: 3'- gUGGUCUag----CCGGgGg---UACGGG-GCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 36531 | 0.66 | 0.525518 |
Target: 5'- cCACCGGGUCaacaCCgUCAuUGCCCaCGGCg -3' miRNA: 3'- -GUGGUCUAGcc--GGgGGU-ACGGG-GCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 52844 | 0.66 | 0.525518 |
Target: 5'- aACC---UCGGCCCCguUcaGgCCCGGCg -3' miRNA: 3'- gUGGucuAGCCGGGGguA--CgGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 100562 | 0.66 | 0.515942 |
Target: 5'- uUugCGGcgauacugCGGCCCCCc-GCgCCGGCc -3' miRNA: 3'- -GugGUCua------GCCGGGGGuaCGgGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 79474 | 0.66 | 0.515942 |
Target: 5'- uCGCCGcGGUCucggcugauaGGCCaCCC--GCUCCGGCa -3' miRNA: 3'- -GUGGU-CUAG----------CCGG-GGGuaCGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 20299 | 0.66 | 0.515942 |
Target: 5'- cCGCgGGGUCGGCCagguugugcaCCGUGCCaucuaGGUu -3' miRNA: 3'- -GUGgUCUAGCCGGg---------GGUACGGgg---CCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 4595 | 0.66 | 0.506437 |
Target: 5'- gGCCAGGUCaaucGCUUCC-UG-CCCGGCa -3' miRNA: 3'- gUGGUCUAGc---CGGGGGuACgGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 32265 | 0.66 | 0.506437 |
Target: 5'- gCACCAGcugcaaccgaAUCGGCgCgCCCGUGCCCa--- -3' miRNA: 3'- -GUGGUC----------UAGCCG-G-GGGUACGGGgccg -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 17085 | 0.66 | 0.506437 |
Target: 5'- gACCAGcaucgCGGCCUgCAUcauccagucGCCuuGGCg -3' miRNA: 3'- gUGGUCua---GCCGGGgGUA---------CGGggCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 87392 | 0.66 | 0.497008 |
Target: 5'- gACCA--UCGGUgUUCAUGCCCaCGGUc -3' miRNA: 3'- gUGGUcuAGCCGgGGGUACGGG-GCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 78750 | 0.66 | 0.497008 |
Target: 5'- -uCCGaGUCGGUgCCCCAgaucgGCUUCGGCg -3' miRNA: 3'- guGGUcUAGCCG-GGGGUa----CGGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 5499 | 0.67 | 0.478393 |
Target: 5'- aCGCCGccGUCGGagUCCAUGaUCCCGGCg -3' miRNA: 3'- -GUGGUc-UAGCCggGGGUAC-GGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 24445 | 0.67 | 0.469215 |
Target: 5'- gGCguGAUCGGCCCC-AUGgggacaucgauCUUCGGCa -3' miRNA: 3'- gUGguCUAGCCGGGGgUAC-----------GGGGCCG- -5' |
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20406 | 3' | -62.7 | NC_004688.1 | + | 4388 | 0.67 | 0.469215 |
Target: 5'- gCGCCucagaaaugagaGGGUugaUGGUCUCgGUGCCCUGGCu -3' miRNA: 3'- -GUGG------------UCUA---GCCGGGGgUACGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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