miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20412 5' -52.3 NC_004688.1 + 65210 0.65 0.971816
Target:  5'- aGGCCCAggAAAUGCuucuuguagcCGUCAUUGACc -3'
miRNA:   3'- -CCGGGUa-UUUGCGcua-------GCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 21145 0.66 0.969413
Target:  5'- aGGCCgAUAAcCGCGGagGCaGUCGGg -3'
miRNA:   3'- -CCGGgUAUUuGCGCUagCGgUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 78763 0.66 0.969413
Target:  5'- uGCCCAUAAACacucCGAgucggUGCCccagAUCGGCu -3'
miRNA:   3'- cCGGGUAUUUGc---GCUa----GCGG----UAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 102827 0.66 0.969413
Target:  5'- uGGCgaUCGUGAGCGCuAUUGCCGaagaaUUGGCg -3'
miRNA:   3'- -CCG--GGUAUUUGCGcUAGCGGU-----AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 26028 0.66 0.969102
Target:  5'- aGGCCCGUGGGCauaccggugcugaGCGGUCcgccuGCCAUacccccgGGCa -3'
miRNA:   3'- -CCGGGUAUUUG-------------CGCUAG-----CGGUAg------CUG- -5'
20412 5' -52.3 NC_004688.1 + 55999 0.66 0.966207
Target:  5'- cGGUUCAcGAugGCGAUCgGCUuUCGuACa -3'
miRNA:   3'- -CCGGGUaUUugCGCUAG-CGGuAGC-UG- -5'
20412 5' -52.3 NC_004688.1 + 32152 0.66 0.966207
Target:  5'- uGCCCcgAccgcAGCGCcuucaacgUGCCAUCGGCa -3'
miRNA:   3'- cCGGGuaU----UUGCGcua-----GCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 11397 0.66 0.966207
Target:  5'- cGGUgCCGUcAGCGCGGU-GCCAcCGAUc -3'
miRNA:   3'- -CCG-GGUAuUUGCGCUAgCGGUaGCUG- -5'
20412 5' -52.3 NC_004688.1 + 41924 0.66 0.966207
Target:  5'- uGCCCGgccaGAACG-GAUCGCgguaGUUGGCg -3'
miRNA:   3'- cCGGGUa---UUUGCgCUAGCGg---UAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 21087 0.66 0.966207
Target:  5'- uGGCCUu--GACGCGGaacuuccagcUCGCCGaagaggUGACg -3'
miRNA:   3'- -CCGGGuauUUGCGCU----------AGCGGUa-----GCUG- -5'
20412 5' -52.3 NC_004688.1 + 105509 0.66 0.962772
Target:  5'- cGGCCCgAUGAAcCGCaaGcgCGCCAUgaaguuugcCGGCg -3'
miRNA:   3'- -CCGGG-UAUUU-GCG--CuaGCGGUA---------GCUG- -5'
20412 5' -52.3 NC_004688.1 + 35552 0.66 0.959101
Target:  5'- -cUCCAUu--CGCcgGAUCGCCAUCGuGCg -3'
miRNA:   3'- ccGGGUAuuuGCG--CUAGCGGUAGC-UG- -5'
20412 5' -52.3 NC_004688.1 + 91170 0.66 0.959101
Target:  5'- aGCCCuc-GAUGauGUCGCCAacaUCGGCa -3'
miRNA:   3'- cCGGGuauUUGCgcUAGCGGU---AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 22898 0.66 0.959101
Target:  5'- uGCCgAU-GACGCccaGGUCGCCGccgCGGCg -3'
miRNA:   3'- cCGGgUAuUUGCG---CUAGCGGUa--GCUG- -5'
20412 5' -52.3 NC_004688.1 + 82572 0.66 0.955189
Target:  5'- cGGCgUCGUAGAUGCGcgcCGCCAgcUgGACg -3'
miRNA:   3'- -CCG-GGUAUUUGCGCua-GCGGU--AgCUG- -5'
20412 5' -52.3 NC_004688.1 + 54324 0.66 0.955189
Target:  5'- aGGCCCA-----GCGGuacUCGCCGUUGGu -3'
miRNA:   3'- -CCGGGUauuugCGCU---AGCGGUAGCUg -5'
20412 5' -52.3 NC_004688.1 + 60627 0.66 0.955189
Target:  5'- uGCCagu-AGCgGCuGUCGCUAUCGACg -3'
miRNA:   3'- cCGGguauUUG-CGcUAGCGGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 10452 0.66 0.955189
Target:  5'- cGGUCCAggu-CGCGGuauuccUCGCCGaccUUGGCa -3'
miRNA:   3'- -CCGGGUauuuGCGCU------AGCGGU---AGCUG- -5'
20412 5' -52.3 NC_004688.1 + 65449 0.67 0.951031
Target:  5'- uGGCCCuccgGGAUGCGGaCGuauCCGUUGAUa -3'
miRNA:   3'- -CCGGGua--UUUGCGCUaGC---GGUAGCUG- -5'
20412 5' -52.3 NC_004688.1 + 5738 0.67 0.951031
Target:  5'- gGGCCCGgguGACGCGGcCGaggggCGGCa -3'
miRNA:   3'- -CCGGGUau-UUGCGCUaGCggua-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.