miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20462 3' -58.3 NC_004688.1 + 39261 0.66 0.783358
Target:  5'- -cCGUUACCGCCGUG-AC-CgGUGGUu -3'
miRNA:   3'- guGCGGUGGUGGCGCuUGuGgCACCG- -5'
20462 3' -58.3 NC_004688.1 + 51956 0.66 0.783358
Target:  5'- -cCGCCGCUGCUGCGGuuguaGCCGaGGg -3'
miRNA:   3'- guGCGGUGGUGGCGCUug---UGGCaCCg -5'
20462 3' -58.3 NC_004688.1 + 90525 0.66 0.783358
Target:  5'- --aGCC-CCACCG-GAAguCCGUcGGCc -3'
miRNA:   3'- gugCGGuGGUGGCgCUUguGGCA-CCG- -5'
20462 3' -58.3 NC_004688.1 + 19095 0.66 0.77409
Target:  5'- cCGgGCCACgCGCUGCaugauuucGAAgGCCGgcgugGGCg -3'
miRNA:   3'- -GUgCGGUG-GUGGCG--------CUUgUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 37265 0.66 0.77409
Target:  5'- gACGUCugCucCCGCGcAUAuccaccacCCGUGGCu -3'
miRNA:   3'- gUGCGGugGu-GGCGCuUGU--------GGCACCG- -5'
20462 3' -58.3 NC_004688.1 + 31732 0.66 0.764696
Target:  5'- aCGCGCUACCcagACCGggcaGAaacACGCCGguuaaGGCu -3'
miRNA:   3'- -GUGCGGUGG---UGGCg---CU---UGUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 26208 0.66 0.764696
Target:  5'- aGCGCCuGCCGCaGCaccugccGCACCG-GGCa -3'
miRNA:   3'- gUGCGG-UGGUGgCGcu-----UGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 75585 0.66 0.764696
Target:  5'- -gUGUCgGCCGCCGCGGACuCCuccGGCu -3'
miRNA:   3'- guGCGG-UGGUGGCGCUUGuGGca-CCG- -5'
20462 3' -58.3 NC_004688.1 + 39542 0.66 0.761855
Target:  5'- --aGCCGCCaACCGCGAcaaGCggcagaagguugcaGCCGagaugGGCg -3'
miRNA:   3'- gugCGGUGG-UGGCGCU---UG--------------UGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 67802 0.66 0.755185
Target:  5'- uGCuCCAUCACUGCGAGCugggcguguugACCGcGGUc -3'
miRNA:   3'- gUGcGGUGGUGGCGCUUG-----------UGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 50204 0.66 0.755185
Target:  5'- aCugGCCGgUGCC-CGAGCGCUgGUGGa -3'
miRNA:   3'- -GugCGGUgGUGGcGCUUGUGG-CACCg -5'
20462 3' -58.3 NC_004688.1 + 39980 0.66 0.755185
Target:  5'- gGCGuCCGCCGCCGCa------GUGGCg -3'
miRNA:   3'- gUGC-GGUGGUGGCGcuuguggCACCG- -5'
20462 3' -58.3 NC_004688.1 + 59336 0.66 0.75231
Target:  5'- gGCGCCAguucggcgagggcuCCACCcugcccgacGCGAugGCCGccgccGGCu -3'
miRNA:   3'- gUGCGGU--------------GGUGG---------CGCUugUGGCa----CCG- -5'
20462 3' -58.3 NC_004688.1 + 36208 0.66 0.75135
Target:  5'- aACGCCGCCggaccacGCaucgcgauauacggCGCGAACACCa-GGCc -3'
miRNA:   3'- gUGCGGUGG-------UG--------------GCGCUUGUGGcaCCG- -5'
20462 3' -58.3 NC_004688.1 + 82295 0.66 0.745566
Target:  5'- aGCGCCACC-CgGuCGAgcGCGCCGaGGa -3'
miRNA:   3'- gUGCGGUGGuGgC-GCU--UGUGGCaCCg -5'
20462 3' -58.3 NC_004688.1 + 11965 0.66 0.745566
Target:  5'- -gUGCCG-CACCGacggguaGGACACCGagcgGGCg -3'
miRNA:   3'- guGCGGUgGUGGCg------CUUGUGGCa---CCG- -5'
20462 3' -58.3 NC_004688.1 + 95751 0.66 0.745566
Target:  5'- uCugGuUCACgACggaaGCGGACGCCG-GGCa -3'
miRNA:   3'- -GugC-GGUGgUGg---CGCUUGUGGCaCCG- -5'
20462 3' -58.3 NC_004688.1 + 86046 0.66 0.744598
Target:  5'- gGCGUccucuagCAUguCCGCGAACACCc-GGCg -3'
miRNA:   3'- gUGCG-------GUGguGGCGCUUGUGGcaCCG- -5'
20462 3' -58.3 NC_004688.1 + 101675 0.66 0.735847
Target:  5'- gUACGCgGCCACCGagGAACAugacCUGaagGGCc -3'
miRNA:   3'- -GUGCGgUGGUGGCg-CUUGU----GGCa--CCG- -5'
20462 3' -58.3 NC_004688.1 + 59968 0.66 0.735847
Target:  5'- -gUGCCACCgcGCCgGCGAccaaGCGCCcgguUGGCu -3'
miRNA:   3'- guGCGGUGG--UGG-CGCU----UGUGGc---ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.