miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20475 5' -49.7 NC_004688.1 + 83296 0.65 0.99557
Target:  5'- aCGgCGUAcccGGCacccucgaaugcgGUGcGGAUUGCCGACc -3'
miRNA:   3'- gGCgGCAU---UUG-------------CAUuCCUAACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 21175 0.66 0.994736
Target:  5'- cCCGCCGcuuAugGguagaucaauuAGGAgagGCCGAUa -3'
miRNA:   3'- -GGCGGCau-UugCau---------UCCUaa-CGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 44340 0.66 0.993102
Target:  5'- aCCGaCCGgggccgcAGCGUAGaGGUcGCCGGCg -3'
miRNA:   3'- -GGC-GGCau-----UUGCAUUcCUAaCGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 74927 0.67 0.990834
Target:  5'- uUCGCCaGUAGAgGUAccAGaGAUaUGCCGAg -3'
miRNA:   3'- -GGCGG-CAUUUgCAU--UC-CUA-ACGGCUg -5'
20475 5' -49.7 NC_004688.1 + 25245 0.67 0.9895
Target:  5'- gCGCCaUAGACGUuuGGAUcgcuaaggaccUGCUGAa -3'
miRNA:   3'- gGCGGcAUUUGCAuuCCUA-----------ACGGCUg -5'
20475 5' -49.7 NC_004688.1 + 28925 0.67 0.988018
Target:  5'- aCCGCCGUAuACGcauccuGGGAgaGCUuGGCc -3'
miRNA:   3'- -GGCGGCAUuUGCau----UCCUaaCGG-CUG- -5'
20475 5' -49.7 NC_004688.1 + 5497 0.67 0.987861
Target:  5'- gCCGCCGUcggaGUccaugaucccggcGAGGAggGCgCGACg -3'
miRNA:   3'- -GGCGGCAuuugCA-------------UUCCUaaCG-GCUG- -5'
20475 5' -49.7 NC_004688.1 + 70983 0.67 0.986379
Target:  5'- uCCG-CGUAGACGgcAGGg--GuuGACg -3'
miRNA:   3'- -GGCgGCAUUUGCauUCCuaaCggCUG- -5'
20475 5' -49.7 NC_004688.1 + 74732 0.67 0.986379
Target:  5'- gCCGaCCGaGAACGUGGGGAcaccuuuccggUUGaCCaGGCg -3'
miRNA:   3'- -GGC-GGCaUUUGCAUUCCU-----------AAC-GG-CUG- -5'
20475 5' -49.7 NC_004688.1 + 107533 0.67 0.986379
Target:  5'- uCCGCUGcgGAACGUGcg----GCCGACa -3'
miRNA:   3'- -GGCGGCa-UUUGCAUuccuaaCGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 49215 0.67 0.984574
Target:  5'- aUGUCG-GGGCGUccgaAAGGAUUGCCcGCa -3'
miRNA:   3'- gGCGGCaUUUGCA----UUCCUAACGGcUG- -5'
20475 5' -49.7 NC_004688.1 + 91718 0.67 0.984574
Target:  5'- uUCGCCGaAGGCGUuccGGAcccagGCCGAa -3'
miRNA:   3'- -GGCGGCaUUUGCAuu-CCUaa---CGGCUg -5'
20475 5' -49.7 NC_004688.1 + 84598 0.67 0.984574
Target:  5'- uCC-CCGUAGACGaUAuaccccuccGGGAUgagGUCGGCg -3'
miRNA:   3'- -GGcGGCAUUUGC-AU---------UCCUAa--CGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 26815 0.68 0.980425
Target:  5'- cCCGCCcagggGAACGUGAGcGGggGuuGAUg -3'
miRNA:   3'- -GGCGGca---UUUGCAUUC-CUaaCggCUG- -5'
20475 5' -49.7 NC_004688.1 + 4004 0.68 0.980425
Target:  5'- aCCGCCGUccAGACGgc-GGcgUGCacgCGGCc -3'
miRNA:   3'- -GGCGGCA--UUUGCauuCCuaACG---GCUG- -5'
20475 5' -49.7 NC_004688.1 + 48601 0.68 0.980425
Target:  5'- aCGuuGUacucGAACG--GGGA-UGCCGACg -3'
miRNA:   3'- gGCggCA----UUUGCauUCCUaACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 3003 0.68 0.972715
Target:  5'- -gGCCucaucccACGUGAGGAaugcgcagUUGCCGGCg -3'
miRNA:   3'- ggCGGcauu---UGCAUUCCU--------AACGGCUG- -5'
20475 5' -49.7 NC_004688.1 + 9201 0.68 0.972715
Target:  5'- gCCGUCGgcGACGU--GGAUaUGCuCGAUg -3'
miRNA:   3'- -GGCGGCauUUGCAuuCCUA-ACG-GCUG- -5'
20475 5' -49.7 NC_004688.1 + 54287 0.69 0.966486
Target:  5'- gCgGCCGgggaacaccaGGGCGUccGGAUUGgCCGGCa -3'
miRNA:   3'- -GgCGGCa---------UUUGCAuuCCUAAC-GGCUG- -5'
20475 5' -49.7 NC_004688.1 + 39256 0.69 0.966486
Target:  5'- aCCGCCGUGAcCGgu--GGUUGUgGACc -3'
miRNA:   3'- -GGCGGCAUUuGCauucCUAACGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.