miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 119882 0.75 0.348743
Target:  5'- aCCgCGCCCCCucCCCAucggcgGGGUaccgcGCCCCCu -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU------UUUA-----UGGGGG- -5'
2059 3' -57 NC_001348.1 + 119719 0.67 0.792757
Target:  5'- aCCCC-CCCCCuuuuucACCCcccc-ACCCCa -3'
miRNA:   3'- -GGGGcGGGGGu-----UGGGuuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 119479 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 119020 0.73 0.474834
Target:  5'- gCCUgGCCggguggaucuCCCAACCCGGAGUACaaaacgcgccggggCCCCg -3'
miRNA:   3'- -GGGgCGG----------GGGUUGGGUUUUAUG--------------GGGG- -5'
2059 3' -57 NC_001348.1 + 118659 0.75 0.356531
Target:  5'- aCCCCGUCCCCAAagagacCCCAGcGUGCCaUCg -3'
miRNA:   3'- -GGGGCGGGGGUU------GGGUUuUAUGGgGG- -5'
2059 3' -57 NC_001348.1 + 118546 0.66 0.859665
Target:  5'- uCCCCGUCUCgauaaCAAUCgCcGGGUACCCCg -3'
miRNA:   3'- -GGGGCGGGG-----GUUGG-GuUUUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 117238 0.67 0.827614
Target:  5'- aCCgGCgaCUacuaAACCCAAGGaaauUACCCCCg -3'
miRNA:   3'- gGGgCGg-GGg---UUGGGUUUU----AUGGGGG- -5'
2059 3' -57 NC_001348.1 + 116150 0.71 0.594477
Target:  5'- uCCCCGCUaucgauaCCaCGGCCCugauuAUACaCCCCa -3'
miRNA:   3'- -GGGGCGG-------GG-GUUGGGuuu--UAUG-GGGG- -5'
2059 3' -57 NC_001348.1 + 115877 0.72 0.515866
Target:  5'- uUCCCGUgauaauUCCgAACCCcaucAAUACCCCCa -3'
miRNA:   3'- -GGGGCG------GGGgUUGGGuu--UUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 114986 0.66 0.851941
Target:  5'- aCCCGCgacaCCCAAagggUCCG--GUACCUCCc -3'
miRNA:   3'- gGGGCGg---GGGUU----GGGUuuUAUGGGGG- -5'
2059 3' -57 NC_001348.1 + 114312 0.69 0.716745
Target:  5'- uCCCCuCCCCCGGCUCAcaGAGcUGCUCUUc -3'
miRNA:   3'- -GGGGcGGGGGUUGGGU--UUU-AUGGGGG- -5'
2059 3' -57 NC_001348.1 + 111246 0.66 0.859665
Target:  5'- uCCCCGUCUCgauaaCAAUCgCcGGGUACCCCg -3'
miRNA:   3'- -GGGGCGGGG-----GUUGG-GuUUUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 111133 0.75 0.356531
Target:  5'- aCCCCGUCCCCAAagagacCCCAGcGUGCCaUCg -3'
miRNA:   3'- -GGGGCGGGGGUU------GGGUUuUAUGGgGG- -5'
2059 3' -57 NC_001348.1 + 110772 0.73 0.474834
Target:  5'- gCCUgGCCggguggaucuCCCAACCCGGAGUACaaaacgcgccggggCCCCg -3'
miRNA:   3'- -GGGgCGG----------GGGUUGGGUUUUAUG--------------GGGG- -5'
2059 3' -57 NC_001348.1 + 110313 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 110056 0.69 0.686811
Target:  5'- cCCCCcCaCCCCAcCCCAuuccACCCCa -3'
miRNA:   3'- -GGGGcG-GGGGUuGGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 109910 0.75 0.348743
Target:  5'- aCCgCGCCCCCucCCCAucggcgGGGUaccgcGCCCCCu -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU------UUUA-----UGGGGG- -5'
2059 3' -57 NC_001348.1 + 109856 0.75 0.348743
Target:  5'- aCCgCGCCCCCucCCCAucggcgGGGUaccgcGCCCCCu -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU------UUUA-----UGGGGG- -5'
2059 3' -57 NC_001348.1 + 109802 0.67 0.796355
Target:  5'- aCCgCGCCCCCucCCCAucggcgggGGGUuacgugaacaccacaACCCCg -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU--------UUUA---------------UGGGGg -5'
2059 3' -57 NC_001348.1 + 109136 0.68 0.765083
Target:  5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3'
miRNA:   3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.