miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2059 3' -57 NC_001348.1 + 107818 0.69 0.676732
Target:  5'- uCCCUGCCgcgaUCCAGaacCCCGAuaauuCCCCCg -3'
miRNA:   3'- -GGGGCGG----GGGUU---GGGUUuuau-GGGGG- -5'
2059 3' -57 NC_001348.1 + 123041 0.66 0.851941
Target:  5'- ---gGCCCCCcggggaauACgCCGAAAU-CCCCCg -3'
miRNA:   3'- ggggCGGGGGu-------UG-GGUUUUAuGGGGG- -5'
2059 3' -57 NC_001348.1 + 118659 0.75 0.356531
Target:  5'- aCCCCGUCCCCAAagagacCCCAGcGUGCCaUCg -3'
miRNA:   3'- -GGGGCGGGGGUU------GGGUUuUAUGGgGG- -5'
2059 3' -57 NC_001348.1 + 106034 0.72 0.545321
Target:  5'- aCCCGCgcgggCCCCAagACCCGcgu--CCCCCu -3'
miRNA:   3'- gGGGCG-----GGGGU--UGGGUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 110056 0.69 0.686811
Target:  5'- cCCCCcCaCCCCAcCCCAuuccACCCCa -3'
miRNA:   3'- -GGGGcG-GGGGUuGGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 120946 0.66 0.859665
Target:  5'- uUCCCGUCCCa---CCAug--ACCCCg -3'
miRNA:   3'- -GGGGCGGGGguugGGUuuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 93150 0.71 0.555263
Target:  5'- -aCUGaaCCCUCAGCCUGGAAcgGCCCCCa -3'
miRNA:   3'- ggGGC--GGGGGUUGGGUUUUa-UGGGGG- -5'
2059 3' -57 NC_001348.1 + 111246 0.66 0.859665
Target:  5'- uCCCCGUCUCgauaaCAAUCgCcGGGUACCCCg -3'
miRNA:   3'- -GGGGCGGGG-----GUUGG-GuUUUAUGGGGg -5'
2059 3' -57 NC_001348.1 + 121461 0.66 0.867186
Target:  5'- aCUCCGuCCCCCGAUgCAugcgcaugACCCgCu -3'
miRNA:   3'- -GGGGC-GGGGGUUGgGUuuua----UGGGgG- -5'
2059 3' -57 NC_001348.1 + 20970 0.68 0.765083
Target:  5'- aUCCCGCCgucgcgCCCAccucggccgcuACCCGAAAgcccgAUCCCg -3'
miRNA:   3'- -GGGGCGG------GGGU-----------UGGGUUUUa----UGGGGg -5'
2059 3' -57 NC_001348.1 + 119479 0.69 0.686811
Target:  5'- cUCCCGCCCCgGAauccCCCAu--UGCCauuuuaCCCa -3'
miRNA:   3'- -GGGGCGGGGgUU----GGGUuuuAUGG------GGG- -5'
2059 3' -57 NC_001348.1 + 116150 0.71 0.594477
Target:  5'- uCCCCGCUaucgauaCCaCGGCCCugauuAUACaCCCCa -3'
miRNA:   3'- -GGGGCGG-------GG-GUUGGGuuu--UAUG-GGGG- -5'
2059 3' -57 NC_001348.1 + 107197 0.69 0.710802
Target:  5'- aCCCCggccacacagGCUCCCGACCCucagccgucgGCCgCCg -3'
miRNA:   3'- -GGGG----------CGGGGGUUGGGuuuua-----UGGgGG- -5'
2059 3' -57 NC_001348.1 + 120656 0.68 0.765083
Target:  5'- gCCCCcCCCUCGACCgCAuauuuCCUCCc -3'
miRNA:   3'- -GGGGcGGGGGUUGG-GUuuuauGGGGG- -5'
2059 3' -57 NC_001348.1 + 108261 0.67 0.801707
Target:  5'- aCCCGCCCaaggaaaCAugauGCCCGGGGUAUaacaCCUCg -3'
miRNA:   3'- gGGGCGGGg------GU----UGGGUUUUAUG----GGGG- -5'
2059 3' -57 NC_001348.1 + 124702 0.66 0.839987
Target:  5'- aCUCCGucaCCCCCGACUCugcggggggcuccuCCCCCc -3'
miRNA:   3'- -GGGGC---GGGGGUUGGGuuuuau--------GGGGG- -5'
2059 3' -57 NC_001348.1 + 124129 0.84 0.110286
Target:  5'- gCCgGCCUCCGGCCCGGcg-GCCCCCg -3'
miRNA:   3'- gGGgCGGGGGUUGGGUUuuaUGGGGG- -5'
2059 3' -57 NC_001348.1 + 109856 0.75 0.348743
Target:  5'- aCCgCGCCCCCucCCCAucggcgGGGUaccgcGCCCCCu -3'
miRNA:   3'- -GGgGCGGGGGuuGGGU------UUUA-----UGGGGG- -5'
2059 3' -57 NC_001348.1 + 105074 0.73 0.449919
Target:  5'- aCCCC-CCCCCGguuucugggcGCCCGGcggACCCCg -3'
miRNA:   3'- -GGGGcGGGGGU----------UGGGUUuuaUGGGGg -5'
2059 3' -57 NC_001348.1 + 124503 0.72 0.539383
Target:  5'- uCCCCGCCCCCcuCCuCGcuGUcccacgcgucuucacACCCCa -3'
miRNA:   3'- -GGGGCGGGGGuuGG-GUuuUA---------------UGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.