miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20596 5' -54.9 NC_004688.1 + 93598 0.66 0.909909
Target:  5'- ---cGGUGAuucguagucgUCGCCGACAuCGACCa- -3'
miRNA:   3'- cccaCCGCU----------AGCGGUUGUuGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 52129 0.66 0.909909
Target:  5'- uGGGUGGCcaauccgauGAUCGUgG---GCGugCUCg -3'
miRNA:   3'- -CCCACCG---------CUAGCGgUuguUGCugGAG- -5'
20596 5' -54.9 NC_004688.1 + 82469 0.66 0.909909
Target:  5'- cGGGaagccgGGCuGGUCGCCGAaguUggUGACCg- -3'
miRNA:   3'- -CCCa-----CCG-CUAGCGGUU---GuuGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 97560 0.66 0.909909
Target:  5'- aGGGUcgcGGCGGUagaGCCGGaaguCGACG-CCUUg -3'
miRNA:   3'- -CCCA---CCGCUAg--CGGUU----GUUGCuGGAG- -5'
20596 5' -54.9 NC_004688.1 + 46092 0.66 0.909909
Target:  5'- uGGGU--UGAUCGCCAGau-CGACCg- -3'
miRNA:   3'- -CCCAccGCUAGCGGUUguuGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 61706 0.66 0.903614
Target:  5'- cGGGUGGagugaugaGGUgCGCCGcGCcGCGGCCg- -3'
miRNA:   3'- -CCCACCg-------CUA-GCGGU-UGuUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 97110 0.66 0.897076
Target:  5'- aGGUGccGCuucuGAUCGauuaCAugGGCGGCCUCa -3'
miRNA:   3'- cCCAC--CG----CUAGCg---GUugUUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 56562 0.66 0.897076
Target:  5'- --uUGGUGAUgUGCCcGCGGCGGCCg- -3'
miRNA:   3'- cccACCGCUA-GCGGuUGUUGCUGGag -5'
20596 5' -54.9 NC_004688.1 + 45170 0.66 0.890295
Target:  5'- gGGGUcGCccggCGCCuAGCuuGCGGCCUCg -3'
miRNA:   3'- -CCCAcCGcua-GCGG-UUGu-UGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 86012 0.66 0.883278
Target:  5'- -cGUGGCGAggUUGCCGACGAguCGAaCCa- -3'
miRNA:   3'- ccCACCGCU--AGCGGUUGUU--GCU-GGag -5'
20596 5' -54.9 NC_004688.1 + 97745 0.67 0.868548
Target:  5'- uGGUGagguGCGAaccgUCGUCGACGAUGAUgUCg -3'
miRNA:   3'- cCCAC----CGCU----AGCGGUUGUUGCUGgAG- -5'
20596 5' -54.9 NC_004688.1 + 67744 0.67 0.868548
Target:  5'- uGGUGG-GAUCGCCAucguugugGCAgACGAgcauucCCUCu -3'
miRNA:   3'- cCCACCgCUAGCGGU--------UGU-UGCU------GGAG- -5'
20596 5' -54.9 NC_004688.1 + 50059 0.67 0.868548
Target:  5'- ---cGGCGGUCGCCAAUggUccaGGCCcCg -3'
miRNA:   3'- cccaCCGCUAGCGGUUGuuG---CUGGaG- -5'
20596 5' -54.9 NC_004688.1 + 87236 0.67 0.860847
Target:  5'- --aUGGC-AUCGCCAA--GCGACUUCg -3'
miRNA:   3'- cccACCGcUAGCGGUUguUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 108095 0.67 0.858494
Target:  5'- uGGUGGCGGUgaggcagcccucuuUGCCGcCAAgGcCCUCa -3'
miRNA:   3'- cCCACCGCUA--------------GCGGUuGUUgCuGGAG- -5'
20596 5' -54.9 NC_004688.1 + 66627 0.67 0.85293
Target:  5'- cGGGgccGGCGAUgcCGCCggUGACGugGCCg- -3'
miRNA:   3'- -CCCa--CCGCUA--GCGGuuGUUGC--UGGag -5'
20596 5' -54.9 NC_004688.1 + 103661 0.67 0.85293
Target:  5'- ---cGGCGA-CGCCAGCGAgGAUCa- -3'
miRNA:   3'- cccaCCGCUaGCGGUUGUUgCUGGag -5'
20596 5' -54.9 NC_004688.1 + 53892 0.67 0.837316
Target:  5'- cGGG-GGCGGgcaggguucguuaaGCCAGCucaugAGCGACCUUc -3'
miRNA:   3'- -CCCaCCGCUag------------CGGUUG-----UUGCUGGAG- -5'
20596 5' -54.9 NC_004688.1 + 107639 0.67 0.836475
Target:  5'- uGGUGGgGAccUCGCCAAgGAUGcuGCCg- -3'
miRNA:   3'- cCCACCgCU--AGCGGUUgUUGC--UGGag -5'
20596 5' -54.9 NC_004688.1 + 77591 0.68 0.827952
Target:  5'- uGGUGGC---CGCCAGCGacacaaucuGCGACgUCg -3'
miRNA:   3'- cCCACCGcuaGCGGUUGU---------UGCUGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.