miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20626 5' -58.8 NC_004688.1 + 9617 0.66 0.79409
Target:  5'- gCUGCGGUGGCcggaugaGGUUCGCgagCCGGAuuuuCCc -3'
miRNA:   3'- -GGUGCCGCUGc------CCAAGCG---GGCCUu---GG- -5'
20626 5' -58.8 NC_004688.1 + 64479 0.66 0.79409
Target:  5'- -aGCGGCaguGCuacGGUUCGgCCGGAugCa -3'
miRNA:   3'- ggUGCCGc--UGc--CCAAGCgGGCCUugG- -5'
20626 5' -58.8 NC_004688.1 + 17915 0.66 0.790538
Target:  5'- gCCGCGGCGAuucugcuucggaguCGGGggCGUuacccccagcuccUUGGGAUCa -3'
miRNA:   3'- -GGUGCCGCU--------------GCCCaaGCG-------------GGCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 82516 0.66 0.785169
Target:  5'- aCugGGUGACGGuGgcguugUCGCCgaacgaccagCGGuuGACCg -3'
miRNA:   3'- gGugCCGCUGCC-Ca-----AGCGG----------GCC--UUGG- -5'
20626 5' -58.8 NC_004688.1 + 105843 0.66 0.783369
Target:  5'- uCCucguCGGCGACaauGGUUUGCCCGucgucaaacgucAGCCg -3'
miRNA:   3'- -GGu---GCCGCUGc--CCAAGCGGGCc-----------UUGG- -5'
20626 5' -58.8 NC_004688.1 + 59783 0.66 0.776117
Target:  5'- cCCGCccGCGAgGGGUggauucuccCGCCUGGAuggaucggugACCg -3'
miRNA:   3'- -GGUGc-CGCUgCCCAa--------GCGGGCCU----------UGG- -5'
20626 5' -58.8 NC_004688.1 + 66640 0.66 0.776117
Target:  5'- gCCGcCGGUGACGuGGccguucagcUUGCCCGGcgcggacuGGCCa -3'
miRNA:   3'- -GGU-GCCGCUGC-CCa--------AGCGGGCC--------UUGG- -5'
20626 5' -58.8 NC_004688.1 + 46222 0.66 0.776117
Target:  5'- gCCA--GUGAaGGGUgUCGCCCGGcuCCa -3'
miRNA:   3'- -GGUgcCGCUgCCCA-AGCGGGCCuuGG- -5'
20626 5' -58.8 NC_004688.1 + 64776 0.66 0.766942
Target:  5'- uCCGCGGCucggcaaAUGGGUguacgacgUGCCgcggCGGGGCCg -3'
miRNA:   3'- -GGUGCCGc------UGCCCAa-------GCGG----GCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 49036 0.66 0.757652
Target:  5'- gCUGCGGCGguaguugccGCGGGgcUCG-UCGGAGCUg -3'
miRNA:   3'- -GGUGCCGC---------UGCCCa-AGCgGGCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 104276 0.66 0.757652
Target:  5'- uCCACGuggauGCGGCcgucGGUgcagCGCUgGGAGCCc -3'
miRNA:   3'- -GGUGC-----CGCUGc---CCAa---GCGGgCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 82413 0.67 0.745418
Target:  5'- --uUGGCGcCGGGcccgUCGCugaagaagaacgugCCGGGGCCg -3'
miRNA:   3'- gguGCCGCuGCCCa---AGCG--------------GGCCUUGG- -5'
20626 5' -58.8 NC_004688.1 + 17621 0.67 0.738763
Target:  5'- --uUGGUG-CGGGUgaugCGCCCGuGGGCa -3'
miRNA:   3'- gguGCCGCuGCCCAa---GCGGGC-CUUGg -5'
20626 5' -58.8 NC_004688.1 + 93524 0.67 0.737809
Target:  5'- uCCACGGgGGCGGagacaacgaaGUgcgCGCCCucgaugcGGAuGCCg -3'
miRNA:   3'- -GGUGCCgCUGCC----------CAa--GCGGG-------CCU-UGG- -5'
20626 5' -58.8 NC_004688.1 + 94202 0.67 0.729181
Target:  5'- aUCGCGGCGggccaACGGGUucUCGaCCCccaaGGAAgucCCg -3'
miRNA:   3'- -GGUGCCGC-----UGCCCA--AGC-GGG----CCUU---GG- -5'
20626 5' -58.8 NC_004688.1 + 181 0.67 0.719518
Target:  5'- gCAUGGCGAUuGcGacCGCCUGaGAGCCa -3'
miRNA:   3'- gGUGCCGCUGcC-CaaGCGGGC-CUUGG- -5'
20626 5' -58.8 NC_004688.1 + 101665 0.67 0.709784
Target:  5'- gCCGuCGGCGACGuGGauaUGCUCGauguGAACCg -3'
miRNA:   3'- -GGU-GCCGCUGC-CCaa-GCGGGC----CUUGG- -5'
20626 5' -58.8 NC_004688.1 + 101285 0.67 0.709784
Target:  5'- gCCGCGGUguaGGCcucGGUUgcCGCCCGGAGg- -3'
miRNA:   3'- -GGUGCCG---CUGc--CCAA--GCGGGCCUUgg -5'
20626 5' -58.8 NC_004688.1 + 77497 0.67 0.709784
Target:  5'- uCCACGGCGAuacucacccaCGGcacaUCGCCCGagcGggUCa -3'
miRNA:   3'- -GGUGCCGCU----------GCCca--AGCGGGC---CuuGG- -5'
20626 5' -58.8 NC_004688.1 + 93174 0.67 0.699987
Target:  5'- -aACGGCGcgcuccACGGGUUCcgGCgCGG-GCCg -3'
miRNA:   3'- ggUGCCGC------UGCCCAAG--CGgGCCuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.