Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20732 | 3' | -57.9 | NC_004688.1 | + | 6421 | 0.66 | 0.779375 |
Target: 5'- uGCgACGAguacCGAUUCCGUGACGCCCu- -3' miRNA: 3'- cUGgUGCU----GUUGGGGCGUUGCGGGuc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 75995 | 0.66 | 0.779375 |
Target: 5'- cGGCCAUGACGuUUCCGUca-GCCCAa -3' miRNA: 3'- -CUGGUGCUGUuGGGGCGuugCGGGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 65875 | 0.66 | 0.779375 |
Target: 5'- aGCCACGGCAGCauuccgaaccaCCCGguGgGCUCGu -3' miRNA: 3'- cUGGUGCUGUUG-----------GGGCguUgCGGGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 56755 | 0.66 | 0.779375 |
Target: 5'- aGGCUucgcuCGuCcgGGCCCCGCAguaGCCCAGg -3' miRNA: 3'- -CUGGu----GCuG--UUGGGGCGUug-CGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 68736 | 0.66 | 0.76996 |
Target: 5'- gGACCugGACGccgagcuuuucgAUCUCGUuuuucacCGCCCAGa -3' miRNA: 3'- -CUGGugCUGU------------UGGGGCGuu-----GCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 49166 | 0.66 | 0.76996 |
Target: 5'- -cCCGuCGAUaaGACCaCCGCucaGCCCAGg -3' miRNA: 3'- cuGGU-GCUG--UUGG-GGCGuugCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 17913 | 0.66 | 0.76996 |
Target: 5'- cGGCCGCGGCGAUUCUGCuucggagucgggGGCGuuaccCCCAGc -3' miRNA: 3'- -CUGGUGCUGUUGGGGCG------------UUGC-----GGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 18951 | 0.66 | 0.76042 |
Target: 5'- uGACCAgGAC--CCCCggGCAACGCgaUCAGg -3' miRNA: 3'- -CUGGUgCUGuuGGGG--CGUUGCG--GGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 103873 | 0.66 | 0.76042 |
Target: 5'- gGGCUuggcguugAUGGCGugCUucaGCAGCGCCCAGc -3' miRNA: 3'- -CUGG--------UGCUGUugGGg--CGUUGCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 57667 | 0.66 | 0.76042 |
Target: 5'- gGACCGCGgu-ACgCCCGCAuCGgCCGGc -3' miRNA: 3'- -CUGGUGCuguUG-GGGCGUuGCgGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 16033 | 0.66 | 0.76042 |
Target: 5'- cACCGCGuACcucuuACCCgCGUAucgcuCGCCCGGa -3' miRNA: 3'- cUGGUGC-UGu----UGGG-GCGUu----GCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 69986 | 0.66 | 0.750765 |
Target: 5'- gGAUgGCGuCAACCCC-CcGCGaCCCGGa -3' miRNA: 3'- -CUGgUGCuGUUGGGGcGuUGC-GGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 31999 | 0.66 | 0.750765 |
Target: 5'- -cCCAgGACGGagUCCUGCAGC-CCCAGc -3' miRNA: 3'- cuGGUgCUGUU--GGGGCGUUGcGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 96003 | 0.66 | 0.750765 |
Target: 5'- gGGCCAgaggaggcuCGAC-ACCCaagGCAgacGCGCCCGGc -3' miRNA: 3'- -CUGGU---------GCUGuUGGGg--CGU---UGCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 46847 | 0.66 | 0.749793 |
Target: 5'- cGGCCGagcgagcUGGCcucauACCCCGgAAgGCCCGGa -3' miRNA: 3'- -CUGGU-------GCUGu----UGGGGCgUUgCGGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 86865 | 0.66 | 0.74492 |
Target: 5'- aGGCCGgGAUAcugacggccgccagcGCCCCGgaGAUGCCCGc -3' miRNA: 3'- -CUGGUgCUGU---------------UGGGGCg-UUGCGGGUc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 35045 | 0.67 | 0.731146 |
Target: 5'- cGGCCGCGGCcucgucGCCCCGCugaauGGCGUCa-- -3' miRNA: 3'- -CUGGUGCUGu-----UGGGGCG-----UUGCGGguc -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 6894 | 0.67 | 0.711178 |
Target: 5'- -gUCGCGAC-ACUgCGCAACGUCaCAGa -3' miRNA: 3'- cuGGUGCUGuUGGgGCGUUGCGG-GUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 108749 | 0.67 | 0.711178 |
Target: 5'- uGCCGuCGGCAACCCUGaacaGGUGuCCCAGg -3' miRNA: 3'- cUGGU-GCUGUUGGGGCg---UUGC-GGGUC- -5' |
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20732 | 3' | -57.9 | NC_004688.1 | + | 75084 | 0.67 | 0.711178 |
Target: 5'- gGACgACGACGcCCCCcCGGC-CCCGGc -3' miRNA: 3'- -CUGgUGCUGUuGGGGcGUUGcGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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