miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20740 3' -56.1 NC_004688.1 + 12974 0.66 0.868517
Target:  5'- gGCGUUCGgGUaauaCUcgGCCCACg- -3'
miRNA:   3'- -CGCAAGCgCGguagGAuaCGGGUGgg -5'
20740 3' -56.1 NC_004688.1 + 67997 0.66 0.868517
Target:  5'- aGCGUgagCGagaaGCCG-CCaAUGCCCGCa- -3'
miRNA:   3'- -CGCAa--GCg---CGGUaGGaUACGGGUGgg -5'
20740 3' -56.1 NC_004688.1 + 61943 0.66 0.86088
Target:  5'- cCGcgCGgGUCGUCCaugGCCUugCCg -3'
miRNA:   3'- cGCaaGCgCGGUAGGauaCGGGugGG- -5'
20740 3' -56.1 NC_004688.1 + 1842 0.66 0.853826
Target:  5'- cGCgGUUCGCGCCAagCUUGguggcggcggcgaagGCCUcCCCc -3'
miRNA:   3'- -CG-CAAGCGCGGUa-GGAUa--------------CGGGuGGG- -5'
20740 3' -56.1 NC_004688.1 + 102774 0.66 0.853032
Target:  5'- aGCGUcCGCGCCAgug---GCCCGuuuggcauCCCg -3'
miRNA:   3'- -CGCAaGCGCGGUaggauaCGGGU--------GGG- -5'
20740 3' -56.1 NC_004688.1 + 22286 0.66 0.844978
Target:  5'- uGCGgagUCGCugggacGCCuUCCUcUGCUC-CCCa -3'
miRNA:   3'- -CGCa--AGCG------CGGuAGGAuACGGGuGGG- -5'
20740 3' -56.1 NC_004688.1 + 68500 0.66 0.844978
Target:  5'- cGCcUUgGCGCuCAaaaaguauuUCCgcagAUGCUCGCCCg -3'
miRNA:   3'- -CGcAAgCGCG-GU---------AGGa---UACGGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 63368 0.67 0.808175
Target:  5'- cGCGUUCGCcacacGCCAUCCcucggggagguaggUGUuuacggGCgCGCCCc -3'
miRNA:   3'- -CGCAAGCG-----CGGUAGG--------------AUA------CGgGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 67676 0.67 0.801879
Target:  5'- -aGggUGCGCCAgCCUucgaGUGCCUugUCg -3'
miRNA:   3'- cgCaaGCGCGGUaGGA----UACGGGugGG- -5'
20740 3' -56.1 NC_004688.1 + 41382 0.67 0.79367
Target:  5'- gGCGacagCGCGCCG-CCguaaacguaaggauUGCCgACCCg -3'
miRNA:   3'- -CGCaa--GCGCGGUaGGau------------ACGGgUGGG- -5'
20740 3' -56.1 NC_004688.1 + 51365 0.67 0.792751
Target:  5'- cGCGgUCGCaccggGCCgGUCCUAccggcUGCUCGCCg -3'
miRNA:   3'- -CGCaAGCG-----CGG-UAGGAU-----ACGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 71726 0.67 0.792751
Target:  5'- aCGUUCcuggaaacgGUGCCGUCg-AUGUCCACCa -3'
miRNA:   3'- cGCAAG---------CGCGGUAGgaUACGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 46620 0.67 0.783473
Target:  5'- gGCGggcCGCcCCGUCaagaAUGaCCCGCCCa -3'
miRNA:   3'- -CGCaa-GCGcGGUAGga--UAC-GGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 27102 0.67 0.783473
Target:  5'- cGUGUccgaccaugUUGCGCCGUCUUGUcUCgCGCCCu -3'
miRNA:   3'- -CGCA---------AGCGCGGUAGGAUAcGG-GUGGG- -5'
20740 3' -56.1 NC_004688.1 + 69558 0.68 0.774056
Target:  5'- uUGUugaUCGaGCCGUCCUG-GCCCaagaggACCCa -3'
miRNA:   3'- cGCA---AGCgCGGUAGGAUaCGGG------UGGG- -5'
20740 3' -56.1 NC_004688.1 + 81759 0.68 0.764509
Target:  5'- uCGgcCGCGCCGggCCUAU-CgCACCCg -3'
miRNA:   3'- cGCaaGCGCGGUa-GGAUAcGgGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 25173 0.68 0.764509
Target:  5'- aUGUccagCGCGCCGuuUCC-GUGCUCGCCg -3'
miRNA:   3'- cGCAa---GCGCGGU--AGGaUACGGGUGGg -5'
20740 3' -56.1 NC_004688.1 + 23983 0.68 0.74506
Target:  5'- cCGccaGCGCC--CCggagAUGCCCGCCCc -3'
miRNA:   3'- cGCaagCGCGGuaGGa---UACGGGUGGG- -5'
20740 3' -56.1 NC_004688.1 + 2932 0.68 0.735179
Target:  5'- uGCGcaCGCGCCG-CCUGgagcuguagGCCCAgCUg -3'
miRNA:   3'- -CGCaaGCGCGGUaGGAUa--------CGGGUgGG- -5'
20740 3' -56.1 NC_004688.1 + 45066 0.68 0.734185
Target:  5'- aGCGUUguggcgcCGCGCCuUCCacUGCCC-CCa -3'
miRNA:   3'- -CGCAA-------GCGCGGuAGGauACGGGuGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.