Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20741 | 3' | -57 | NC_004688.1 | + | 82326 | 0.66 | 0.830983 |
Target: 5'- cGUCUCCuCCGUaucgaggUGGAGGuugugcagcgccaccCGGucgaGCGCGCCg -3' miRNA: 3'- -UAGAGG-GGUA-------GCCUCU---------------GCU----UGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 68037 | 0.66 | 0.828442 |
Target: 5'- gAUCUCgaCAUUGGcGACGGuuuuUGCGCCc -3' miRNA: 3'- -UAGAGggGUAGCCuCUGCUu---GCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 63938 | 0.66 | 0.828442 |
Target: 5'- gAUCgcgcCCCCAcacuggcCGGGGACcgccucggcgGGGCGUGCCg -3' miRNA: 3'- -UAGa---GGGGUa------GCCUCUG----------CUUGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 4524 | 0.66 | 0.828442 |
Target: 5'- ---cCCCCAUUaGGGGCGAGC-CGCUc -3' miRNA: 3'- uagaGGGGUAGcCUCUGCUUGcGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 41403 | 0.66 | 0.802165 |
Target: 5'- -gUUCCCCuccguacgucCGuGGGCGAcaGCGCGCCg -3' miRNA: 3'- uaGAGGGGua--------GCcUCUGCU--UGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 106706 | 0.66 | 0.802165 |
Target: 5'- uAUCUgCCCGUCGGGca-GAA-GUGCCg -3' miRNA: 3'- -UAGAgGGGUAGCCUcugCUUgCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 99297 | 0.66 | 0.802165 |
Target: 5'- uAUUUCUgCCAgUGGGGGCGcGCaGCGCCa -3' miRNA: 3'- -UAGAGG-GGUaGCCUCUGCuUG-CGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 7539 | 0.66 | 0.79308 |
Target: 5'- gGUCagCCCCGgauaaGGAGugGAcucgagaaguuuGgGCGCCg -3' miRNA: 3'- -UAGa-GGGGUag---CCUCugCU------------UgCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 53779 | 0.66 | 0.79308 |
Target: 5'- uGUCgCCCCAuUUGGguaGGACGAuCGUGUCg -3' miRNA: 3'- -UAGaGGGGU-AGCC---UCUGCUuGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 17916 | 0.67 | 0.783847 |
Target: 5'- -gCUCUCCAcgaCGGGGGUGA-CGUGCCa -3' miRNA: 3'- uaGAGGGGUa--GCCUCUGCUuGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 74029 | 0.67 | 0.774475 |
Target: 5'- ---gCCCCAUCGGGGGUGAGgGCuaCg -3' miRNA: 3'- uagaGGGGUAGCCUCUGCUUgCGcgG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 31618 | 0.67 | 0.755352 |
Target: 5'- -cCUCCCC--CGuGGugGGGgGCGCCg -3' miRNA: 3'- uaGAGGGGuaGCcUCugCUUgCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 93319 | 0.67 | 0.735785 |
Target: 5'- cGUCUUUCCA--GGAGACGuACGCcaugGCCg -3' miRNA: 3'- -UAGAGGGGUagCCUCUGCuUGCG----CGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 28127 | 0.67 | 0.735785 |
Target: 5'- cGUCUcgCCCCAgaUCGGgaGGAUGAGCaggauGCGCUg -3' miRNA: 3'- -UAGA--GGGGU--AGCC--UCUGCUUG-----CGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 60793 | 0.68 | 0.725859 |
Target: 5'- gGUCcaggCCCCGcCGGGGAUGAACaugaagaccgGCGCg -3' miRNA: 3'- -UAGa---GGGGUaGCCUCUGCUUG----------CGCGg -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 63351 | 0.68 | 0.695624 |
Target: 5'- ---aUCCC-UCGGGGAgguagguguuuaCGGGCGCGCCc -3' miRNA: 3'- uagaGGGGuAGCCUCU------------GCUUGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 8323 | 0.68 | 0.685424 |
Target: 5'- uUCUgaagCCCCAUCuGGuAGGCGGugaaACGgGCCg -3' miRNA: 3'- uAGA----GGGGUAG-CC-UCUGCU----UGCgCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 19262 | 0.68 | 0.6721 |
Target: 5'- cUCUCCCCcgccgaugcgguggaCGGAGAUGAACG-GCa -3' miRNA: 3'- uAGAGGGGua-------------GCCUCUGCUUGCgCGg -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 58438 | 0.69 | 0.654593 |
Target: 5'- cGUCaaCCUAUgGGGcGGgGAGCGCGCCu -3' miRNA: 3'- -UAGagGGGUAgCCU-CUgCUUGCGCGG- -5' |
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20741 | 3' | -57 | NC_004688.1 | + | 33119 | 0.69 | 0.644267 |
Target: 5'- -aCUCCCC---GGGGGCGccCGUGCCg -3' miRNA: 3'- uaGAGGGGuagCCUCUGCuuGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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