miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20748 3' -65 NC_004688.1 + 35761 0.66 0.42635
Target:  5'- cCCGGCCgagaACGCCUGCagcgucaccCCGCuCGGUa- -3'
miRNA:   3'- uGGCCGG----UGUGGACGa--------GGCG-GCCGgu -5'
20748 3' -65 NC_004688.1 + 38702 0.66 0.42635
Target:  5'- aAUCuuuGCCcCACCcGCUCCGCCGccGCCGc -3'
miRNA:   3'- -UGGc--CGGuGUGGaCGAGGCGGC--CGGU- -5'
20748 3' -65 NC_004688.1 + 36170 0.66 0.42635
Target:  5'- cACCaGGCCgaacgACGCCuUGCUgUgGCUGGCCGc -3'
miRNA:   3'- -UGG-CCGG-----UGUGG-ACGA-GgCGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 105916 0.66 0.42635
Target:  5'- -aUGGCCGCAgagaUGCg-CGCCGGCCu -3'
miRNA:   3'- ugGCCGGUGUgg--ACGagGCGGCCGGu -5'
20748 3' -65 NC_004688.1 + 19096 0.66 0.409366
Target:  5'- uCCgGGCCACGCgCUGCaugauUUCGaaGGCCGg -3'
miRNA:   3'- uGG-CCGGUGUG-GACG-----AGGCggCCGGU- -5'
20748 3' -65 NC_004688.1 + 45201 0.66 0.401033
Target:  5'- cCCGGCC-CGCaa-CUCUuugauGCCGGCCAc -3'
miRNA:   3'- uGGCCGGuGUGgacGAGG-----CGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 46185 0.66 0.401033
Target:  5'- cACCGGCCAgcugucCGCCcgggUGCUCCaGgUGGUCGa -3'
miRNA:   3'- -UGGCCGGU------GUGG----ACGAGG-CgGCCGGU- -5'
20748 3' -65 NC_004688.1 + 93004 0.66 0.39281
Target:  5'- -aUGGCCAUACCggGCaggCGCCGGCgAa -3'
miRNA:   3'- ugGCCGGUGUGGa-CGag-GCGGCCGgU- -5'
20748 3' -65 NC_004688.1 + 16981 0.66 0.39281
Target:  5'- uCCGGCCGCGgUgcggGCgaugaCGUCGGCCu -3'
miRNA:   3'- uGGCCGGUGUgGa---CGag---GCGGCCGGu -5'
20748 3' -65 NC_004688.1 + 20907 0.66 0.39281
Target:  5'- gUCGGCCAucuCGCCgGCgaCCGCaaCGGCCGu -3'
miRNA:   3'- uGGCCGGU---GUGGaCGa-GGCG--GCCGGU- -5'
20748 3' -65 NC_004688.1 + 37986 0.66 0.390364
Target:  5'- uCCGGCUGCAaagccuccagggCUGCaucguuaUCCGCCGcGCCAg -3'
miRNA:   3'- uGGCCGGUGUg-----------GACG-------AGGCGGC-CGGU- -5'
20748 3' -65 NC_004688.1 + 48438 0.66 0.387928
Target:  5'- cCCGGCCagagugaagcuugauACAC--GCUCCGCCaccgagcgGGCCAa -3'
miRNA:   3'- uGGCCGG---------------UGUGgaCGAGGCGG--------CCGGU- -5'
20748 3' -65 NC_004688.1 + 38511 0.66 0.384696
Target:  5'- -aCGGCCACACCUugUCaaaGCUGGUCc -3'
miRNA:   3'- ugGCCGGUGUGGAcgAGg--CGGCCGGu -5'
20748 3' -65 NC_004688.1 + 79863 0.67 0.368806
Target:  5'- aACUGaGCgACACCcacggGCgcCCGUCGGCCGa -3'
miRNA:   3'- -UGGC-CGgUGUGGa----CGa-GGCGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 25964 0.67 0.368806
Target:  5'- gACCGGCCugACgcaucaggCUGCcccaaUCCugGCCGGUCGc -3'
miRNA:   3'- -UGGCCGGugUG--------GACG-----AGG--CGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 58146 0.67 0.358722
Target:  5'- gACCGGucgagaacagccauCCGCACCUGCgg-GCgCGGCCc -3'
miRNA:   3'- -UGGCC--------------GGUGUGGACGaggCG-GCCGGu -5'
20748 3' -65 NC_004688.1 + 69311 0.67 0.353372
Target:  5'- cUCGGCCGCAgC-GCUcacacaggCCGUCGGCCc -3'
miRNA:   3'- uGGCCGGUGUgGaCGA--------GGCGGCCGGu -5'
20748 3' -65 NC_004688.1 + 17673 0.67 0.353372
Target:  5'- uCCGGCgCGgGCC-GCUUgGCgGGCCGa -3'
miRNA:   3'- uGGCCG-GUgUGGaCGAGgCGgCCGGU- -5'
20748 3' -65 NC_004688.1 + 31661 0.67 0.3384
Target:  5'- aACUGGCCGCGCaggGCggacaGCuCGGCCGa -3'
miRNA:   3'- -UGGCCGGUGUGga-CGagg--CG-GCCGGU- -5'
20748 3' -65 NC_004688.1 + 42007 0.68 0.331089
Target:  5'- uCCGGCCugGgCgGCggggUCGCCGGuCCGg -3'
miRNA:   3'- uGGCCGGugUgGaCGa---GGCGGCC-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.